Skills and MCP tagged “life-science-research”

ncbi-entrez-skill official OpenAI skill This skill sends NCBI Entrez requests for PubMed, Gene, Protein, Nucleotide, PMC, and GEO data. Use it for focused search and record lookups. CX Codex GP ChatGPT 17installs ncbi-blast-skill official OpenAI skill Submits searches to NCBI BLAST via the Common URL API, polls job status by RID, and formats compact summaries for nucleotide or protein sequences. CX Codex GP ChatGPT 17installs research-router-skill official OpenAI skill This skill routes broad life-sciences questions to the right skills, normalizes key entities, and produces a concise evidence-backed synthesis. Use it when one lookup is not enough. CX Codex GP ChatGPT 16installs ncbi-datasets-skill official OpenAI skill Queries NCBI Datasets v2 for genome, assembly, and taxonomy metadata. It produces compact summaries directly in Codex without large raw dumps. CX Codex GP ChatGPT 16installs ncbi-pmc-skill official OpenAI skill Skill to search NCBI PMC Open Access for article availability metadata. Returns concise summaries by PMCID or DOI, saves raw XML on request. CX Codex GP ChatGPT 15installs uniprot-skill official OpenAI skill This skill sends compact requests to the UniProt REST API and returns summaries for proteins, clusters, and sequences. Use it for focused bioinformatics lookups. CX Codex GP ChatGPT 14installs string-skill official OpenAI skill Submits compact STRING API requests for protein networks and enrichment. Useful for retrieving quick biological summaries without leaving the terminal. CX Codex GP ChatGPT 14installs rhea-skill official OpenAI skill Sends compact search queries to the Rhea database and returns concise summaries for biochemical reactions, compounds, or reaction IDs. CX Codex GP ChatGPT 14installs reactome-skill official OpenAI skill Queries Reactome ContentService for biological pathways, reactions, and participants. Returns concise markdown summaries directly in Codex. CX Codex GP ChatGPT 14installs rcsb-pdb-skill official OpenAI skill This skill sends RCSB PDB requests for metadata, search results, and FASTA. Use it when an agent needs compact structure-data summaries. CX Codex GP ChatGPT 14installs quickgo-skill official OpenAI skill Queries the QuickGO API to fetch Gene Ontology terms, protein annotations, and ontology hierarchies as compact summaries. CX Codex GP ChatGPT 14installs ncbi-clinicaltables-skill official OpenAI skill This skill searches human genes through NCBI Clinical Tables and returns compact autocomplete-style rows. Use it for field selection and paginated results. CX Codex GP ChatGPT 14installs mgnify-skill official OpenAI skill Query MGnify studies, samples, and biome metadata, then get concise summaries. Use it when you need a focused view of microbiome data. CX Codex GP ChatGPT 14installs gwas-catalog-skill official OpenAI skill This skill sends compact requests to the GWAS Catalog REST API v2 and returns summaries for genomic studies. Use it for focused biomedical data lookups. CX Codex GP ChatGPT 14installs biorxiv-skill official OpenAI skill Submits compact bioRxiv and medRxiv API queries to retrieve preprint metadata summaries and journal publication links. CX Codex GP ChatGPT 14installs alphafold-skill official OpenAI skill Sends compact API requests to the AlphaFold database for predictions and UniProt summaries. Useful when querying protein structure metadata. CX Codex GP ChatGPT 14installs ukb-topmed-phewas-skill official OpenAI skill Fetch a compact UKB-TOPMed PheWAS summary for one variant. Useful when the input arrives as an rsID or GRCh37/GRCh38 coordinates. CX Codex GP ChatGPT 13installs tpmi-phewas-skill official OpenAI skill Fetch a compact TPMI PheWAS summary for one variant. Useful when the input arrives as an rsID or GRCh37/GRCh38 coordinates. CX Codex GP ChatGPT 13installs rnacentral-skill official OpenAI skill This skill queries RNAcentral to search RNA entries, inspect a single record, and retrieve cross-references. Use it when an agent needs concise RNAcentral summaries. CX Codex GP ChatGPT 13installs proteomexchange-skill official OpenAI skill Submits compact ProteomeXchange PROXI requests to fetch datasets, spectra, proteins, and USI examples. CX Codex GP ChatGPT 13installs pride-skill official OpenAI skill Searches PRIDE Archive for proteomics projects and retrieves project-level metadata. Use it to get concise summaries of archive results. CX Codex GP ChatGPT 13installs pharmgkb-skill official OpenAI skill Submits compact requests to the PharmGKB API and returns brief summaries for genes, variants, and drug dosing. CX Codex GP ChatGPT 13installs opentargets-skill official OpenAI skill This skill sends compact Open Targets GraphQL requests for target, disease, drug, variant, and study data. Use it for concise summaries and datasource evidence context. CX Codex GP ChatGPT 13installs metabolights-skill official OpenAI skill Queries the MetaboLights archive and returns compact metabolomics study metadata. Helpful when you need quick study discovery directly in your coding agent. CX Codex GP ChatGPT 13installs ipd-skill official OpenAI skill This skill sends compact requests to the IPD API for HLA allele and cell metadata. Use it when you need concise results. CX Codex GP ChatGPT 13installs human-protein-atlas-skill official OpenAI skill Queries Human Protein Atlas for gene, tissue, and cell-line data. Use it when an agent needs concise summaries or search downloads. CX Codex GP ChatGPT 13installs hmdb-skill official OpenAI skill A skill for searching metabolites, proteins, diseases, and pathways in the HMDB database. Submits compact requests and returns concise summaries. CX Codex GP ChatGPT 13installs gtex-eqtl-skill official OpenAI skill This skill fetches GTEx single-tissue eQTL associations for one variant and turns rsID, GRCh37, or GRCh38 input into a GRCh38 query. It returns JSON. CX Codex GP ChatGPT 13installs gnomad-graphql-skill official OpenAI skill This skill sends focused gnomAD GraphQL requests for variant frequency, gene constraint, and transcript context. Use it when an agent needs a concise summary. CX Codex GP ChatGPT 13installs genebass-gene-burden-skill official OpenAI skill Submits compact Genebass gene burden queries for an Ensembl gene ID and burden set. Useful for quick PheWAS summary reports without heavy data dumps. CX Codex GP ChatGPT 13installs finngen-phewas-skill official OpenAI skill This skill fetches compact FinnGen PheWAS results for one variant. It accepts an rsID or GRCh37/GRCh38 coordinates and resolves the query to GRCh38. CX Codex GP ChatGPT 13installs eva-skill official OpenAI skill Sends compact queries to the European Variation Archive and returns concise summaries for species metadata or targeted variants. CX Codex GP ChatGPT 13installs epigraphdb-skill official OpenAI skill This skill sends requests to EpiGraphDB and turns the responses into concise summaries. Use it to look up ontology, literature, Mendelian randomization, gene-drug, and support-path evidence. CX Codex GP ChatGPT 13installs encode-skill official OpenAI skill Runs compact ENCODE REST API queries for object lookups, catalog searches, and metadata summaries. Helpful for genomic data workflows. CX Codex GP ChatGPT 13installs efo-ontology-skill official OpenAI skill This skill sends EFO requests through OLS4 to find terms and expand their relationships. Use it for concise ontology summaries. CX Codex GP ChatGPT 13installs clinvar-variation-skill official OpenAI skill Queries ClinVar Clinical Tables and NCBI Variation to look up genetic variants, identifiers, and summary records. CX Codex GP ChatGPT 13installs clinicaltrials-skill official OpenAI skill This skill sends compact requests to the ClinicalTrials.gov API v2 and returns concise study summaries. Use it for study search and field inspection. CX Codex GP ChatGPT 13installs civic-skill official OpenAI skill Runs targeted GraphQL queries against CIViC to inspect schemas and extract cancer variant evidence. Fits life science research workflows in Codex. CX Codex GP ChatGPT 13installs chembl-skill official OpenAI skill This skill queries the ChEMBL API for activity, molecule, target, mechanism, and text-search data. Use it when you need concise summaries of ChEMBL records. CX Codex GP ChatGPT 13installs cellxgene-skill official OpenAI skill This skill sends compact CELLxGENE Discover API requests and summarizes public collection and dataset metadata. Use it for focused single-cell lookups. CX Codex GP ChatGPT 13installs