Skip to main content
affpapa.org
RU EN
skill CX Codex GP ChatGPT official · OpenAI

genebass-gene-burden-skill — Codex skill: what it does, how to install

Submits compact Genebass gene burden queries for an Ensembl gene ID and burden set. Useful for quick PheWAS summary reports without heavy data dumps.

Install into Codex · Skills CLI (Vercel) All methods and platforms ↓ 
npx skills add openai/plugins --skill genebass-gene-burden-skill -a codex
Open on GitHub

What genebass-gene-burden-skill does

The skill executes scripts/genebass_gene_burden.py by piping JSON through stdin. Each run handles exactly one Ensembl gene ID. By default, it produces a compact markdown summary instead of a heavy data dump. Raw JSON is returned only when machine-readable output is requested.

Supported burden sets include pLoF, missense|LC, and synonymous. The script caps max_results at 25 for general overviews. In long conversations, the skill instructs the agent to rerun queries rather than rely on stale tool output. Truncation dots ... in previews are treated as UI artifacts.

It requires only Python and the included script. Install it if you query Genebass PheWAS associations often and need concise summaries.

What it helps with

  • Query PheWAS associations for a specific Ensembl gene ID
  • Limit Genebass burden results to twenty-five records
  • Retrieve concise summaries for pLoF, missense|LC, or synonymous sets
  • Output structured JSON containing association counts and gene metadata

Example prompts for the agent

  • Show Genebass burden associations for gene ENSG00000173531 using pLoF
  • Give me a concise PheWAS summary for ENSG00000173531 capped at 25 results
  • Return raw JSON associations for ENSG00000173531 with burden set synonymous

How to install genebass-gene-burden-skill

1Skills CLI (Vercel)

npx skills add openai/plugins --skill genebass-gene-burden-skill -a codex

2Manually: put the files in place

.agents/skills/genebass-gene-burden-skill/SKILL.md

For all projects use ~/.agents/skills/

From the same set201

The whole set →
supabase official supabase Guides the agent through database configuration and strict RLS policies in Supabase. CX Codex GP ChatGPT 8installs remotion-render official Remotion Exports videos and static stills from Remotion projects using CLI commands. CX Codex GP ChatGPT 3installs figma-create-new-file official Figma Creates blank Figma, FigJam, or Slides files inside draft folders. It resolves planKey and editor types before invoking Figma MCP tools. CX Codex GP ChatGPT 6installs swiftui-performance-audit official OpenAI Pinpoints SwiftUI runtime issues like frame drops, unresponsive taps, and excessive view body computations. Works code-first and guides Instruments profiling. CX Codex GP ChatGPT 109installs swiftui-liquid-glass official OpenAI This skill helps build and review SwiftUI Liquid Glass interfaces for iOS 26+. Use it when adopting the API or checking fallbacks, interaction, and design fit. CX Codex GP ChatGPT 121installs swiftui-ui-patterns official OpenAI This skill helps build and refactor SwiftUI interfaces, from navigation and state to layouts and controls. Use it for new screens or changes to an existing project. CX Codex GP ChatGPT 114installs swiftui-view-refactor official OpenAI Refactors SwiftUI view files into clean, testable structures with dedicated subview types and proper Observation ownership. CX Codex GP ChatGPT 113installs ios-memgraph-leaks official OpenAI Captures and inspects iOS leaks from a simulator process or .memgraph. Useful for tracing retained objects and checking a fix with before-and-after evidence. CX Codex GP ChatGPT 1,054installs

Similar

kql microsoft This skill helps agents write, debug, and review KQL queries. Use it for ADX, Log Analytics, Sentinel, and other Microsoft data services. Claude Code GitHub Copilot 58installs xlsx official anthropics Creates, reads, edits, and converts spreadsheet files. Use it when the requested deliverable is an Excel workbook or another tabular file. Claude Code Claude.ai 187,223installs google-agents-cli-observability official Google This skill guides you through tracing and monitoring AI agents, including ADK agents. Use it when you need to inspect agent execution or monitor a deployed agent. Claude Code CX Codex Cursor +1 509,900installs caveman-evidence-review JuliusBrussee A read-only skill reviews Caveman Cloud evidence on LLM spend, traces, and routing. Use it to see where a project’s model budget goes. Claude Code CX Codex Cursor +1 103,500installs migration JuliusBrussee Enforces reversible, compatibility-safe transitions for schema, data, and API updates. Useful whenever data loss or rollout downtime is unacceptable. Claude Code CX Codex Cursor +1 102,900installs performance-optimization addyosmani An agent skill that measures before it changes code: Core Web Vitals budgets, N+1 queries, missing indexes and slow endpoints. Claude Code CX Codex Cursor +1 64,500installs

Questions about genebass-gene-burden-skill

How do I install genebass-gene-burden-skill in Codex?

Run npx skills add openai/plugins --skill genebass-gene-burden-skill. The configuration is saved to .agents/skills/genebass-gene-burden-skill/SKILL.md.

What does genebass-gene-burden-skill do?

It passes an Ensembl identifier to scripts/genebass_gene_burden.py and returns a compact summary of Genebass PheWAS associations. By default, it formats output as readable markdown limited to 25 items.

Which burden sets are supported by the skill?

The script supports pLoF, missense|LC, and synonymous, handling their aliases internally. Each invocation accepts only one Ensembl gene ID and one burden set.

See also

Project sponsors

Companies that keep this analytics open
Gold sponsor
Nutra.Club

Impressions, clicks and code copies — open statistics. We keep the numbers public for the same reason NeBlask itself is public. Become a sponsor