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skill CX Codex GP ChatGPT official · OpenAI

opentargets-skill — Codex skill: what it does, how to install

This skill sends compact Open Targets GraphQL requests for target, disease, drug, variant, and study data. Use it for concise summaries and datasource evidence context.

Install into Codex · Skills CLI (Vercel) All methods and platforms ↓ 
npx skills add openai/plugins --skill opentargets-skill -a codex
Open on GitHub

What opentargets-skill does

opentargets-skill queries the Open Targets Platform through GraphQL. It covers targets, diseases, drugs, variants, studies, and search results. A separate helper builds an associated-disease datasource matrix and heatmap data.

The skill uses scripts/opentargets_graphql.py for regular requests and scripts/opentargets_disease_heatmap.py for datasource evidence matrices. Inputs can include max_items, query_path, and query variables; for nested results, start with max_items=3 to 5. The default output is a compact summary, while verbatim JSON is reserved for explicit machine-readable requests.

Install it when an agent needs focused Open Targets lookups and source context. Skip it when the task calls for a large schema dump or an unrestricted GraphQL response, because the skill is designed around narrow field selection.

What it helps with

  • look up a target, disease, or drug in Open Targets
  • retrieve details for a variant or study
  • summarize a focused GraphQL response
  • compare disease evidence across datasources
  • filter diseases by part of their name

Example prompts for the agent

  • Find Open Targets data for MST1 and return a concise summary.
  • Build a datasource matrix for associated diseases of `ENSG00000186868`.
  • Run this request through `scripts/opentargets_graphql.py` with `max_items=3`.

How to install opentargets-skill

1Skills CLI (Vercel)

npx skills add openai/plugins --skill opentargets-skill -a codex

2Manually: put the files in place

.agents/skills/opentargets-skill/SKILL.md

For all projects use ~/.agents/skills/

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Questions about opentargets-skill

How do I install opentargets-skill in Codex?

Run npx skills add openai/plugins --skill opentargets-skill -a codex. The skill file is placed at .agents/skills/opentargets-skill/SKILL.md.

What does opentargets-skill do?

It sends targeted GraphQL requests to Open Targets and returns concise summaries for targets, diseases, drugs, variants, studies, and search results.

Is opentargets-skill available for ChatGPT?

Yes. The listed platforms are Codex and ChatGPT.

See also

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