Skip to main content
affpapa.org
RU EN
skill CX Codex GP ChatGPT official · OpenAI

gtex-eqtl-skill — Codex skill: what it does, how to install

This skill fetches GTEx single-tissue eQTL associations for one variant and turns rsID, GRCh37, or GRCh38 input into a GRCh38 query. It returns JSON.

Install into Codex · Skills CLI (Vercel) All methods and platforms ↓ 
npx skills add openai/plugins --skill gtex-eqtl-skill -a codex
Open on GitHub

What gtex-eqtl-skill does

gtex-eqtl-skill accepts one variant as an rsID, GRCh37 coordinate, or GRCh38 coordinate. It normalizes the value to chrom-pos-ref-alt, builds the GTEx identifier chr{chrom}_{pos}_{ref}_{alt}_b38, and queries the GTEx v2 API for single-tissue eQTL associations. The JSON response includes status, input details, normalized variant data, row counts, eQTL records, paging information, and warnings.

The skill runs scripts/gtex_eqtl.py, which reads JSON from stdin and writes JSON to stdout. Input can be a plain string or an object with optional max_results to cap the returned rows. Network calls use Python requests.

One concrete constraint matters: pass exactly one of rsid, grch37, grch38, or variant, because the skill expects a single variant source.

What it helps with

  • fetch GTEx eQTL associations for a variant
  • convert GRCh37 coordinates into a GRCh38 query
  • resolve an rsID through the GTEx v2 API
  • cap the number of returned eQTL rows
  • return the result as JSON without markdown

Example prompts for the agent

  • Fetch GTEx eQTL associations for `rs7903146` and return JSON.
  • Process `10-112998590-C-T` as GRCh38 and return at most 5 rows.
  • Send `{"grch37":"10-114758349-C-T"}` to `scripts/gtex_eqtl.py` and show the JSON response.

How to install gtex-eqtl-skill

1Skills CLI (Vercel)

npx skills add openai/plugins --skill gtex-eqtl-skill -a codex

2Manually: put the files in place

.agents/skills/gtex-eqtl-skill/SKILL.md

For all projects use ~/.agents/skills/

From the same set201

The whole set →
supabase official supabase Guides the agent through database configuration and strict RLS policies in Supabase. CX Codex GP ChatGPT 8installs remotion-render official Remotion Exports videos and static stills from Remotion projects using CLI commands. CX Codex GP ChatGPT 3installs figma-create-new-file official Figma Creates blank Figma, FigJam, or Slides files inside draft folders. It resolves planKey and editor types before invoking Figma MCP tools. CX Codex GP ChatGPT 6installs swiftui-performance-audit official OpenAI Pinpoints SwiftUI runtime issues like frame drops, unresponsive taps, and excessive view body computations. Works code-first and guides Instruments profiling. CX Codex GP ChatGPT 109installs swiftui-liquid-glass official OpenAI This skill helps build and review SwiftUI Liquid Glass interfaces for iOS 26+. Use it when adopting the API or checking fallbacks, interaction, and design fit. CX Codex GP ChatGPT 121installs swiftui-ui-patterns official OpenAI This skill helps build and refactor SwiftUI interfaces, from navigation and state to layouts and controls. Use it for new screens or changes to an existing project. CX Codex GP ChatGPT 114installs swiftui-view-refactor official OpenAI Refactors SwiftUI view files into clean, testable structures with dedicated subview types and proper Observation ownership. CX Codex GP ChatGPT 113installs ios-memgraph-leaks official OpenAI Captures and inspects iOS leaks from a simulator process or .memgraph. Useful for tracing retained objects and checking a fix with before-and-after evidence. CX Codex GP ChatGPT 1,054installs

Similar

build-evidence-map official github Builds an auditable evidence map for a disputed decision while retaining support, counterevidence and gaps. Use it when a prose summary would hide disagreement. GitHub Copilot 70installs anysearch anysearch-ai This skill gives an agent web search, domain-specific queries, parallel batch search, and page extraction. Use it when a task needs current information or a claim needs checking. Claude Code CX Codex Cursor +1 38,500installs academic-paper Imbad0202 This skill runs a 12-agent academic pipeline across 11 modes. It guides projects from literature searches and outlines to citation audits and rebuttal reviews. Claude Code CX Codex Cursor +1 10,800installs nature-figure Yuan1z0825 A skill that builds, revises and audits scientific figures for manuscripts in Python or R. Useful when plots go to submission, not to a report. Claude Code CX Codex Cursor +1 18,700installs academic-paper-reviewer Imbad0202 This skill reviews an academic paper through five role-based perspectives. Use it for peer review, revision checks, or a focused methodology assessment. Claude Code CX Codex Cursor +1 9,800installs nature-polishing Yuan1z0825 A skill that polishes, translates and tightens existing academic prose. Facts, terminology and evidence boundaries stay intact. Claude Code CX Codex Cursor +1 17,400installs nature-citation Yuan1z skill, refactored into static/dynamic layers Finds Nature and CNS-family papers for manuscript claims, maps claims to sources, and prepares a reference-manager export. Use it when the journal scope matters. Claude Code CX Codex Cursor +1 15,600installs

Questions about gtex-eqtl-skill

How do I install gtex-eqtl-skill in Codex?

Run npx skills add openai/plugins --skill gtex-eqtl-skill -a codex, then check .agents/skills/gtex-eqtl-skill/SKILL.md.

What does gtex-eqtl-skill do?

It accepts one rsID, GRCh37 coordinate, or GRCh38 coordinate, resolves it to a GRCh38 query, and returns GTEx eQTL associations as JSON.

Which input formats does gtex-eqtl-skill support?

Use one of rsid, grch37, grch38, or variant. Coordinate values may use -, :, _, /, or whitespace as separators.

See also

Project sponsors

Companies that keep this analytics open
Gold sponsor
Nutra.Club

Impressions, clicks and code copies — open statistics. We keep the numbers public for the same reason NeBlask itself is public. Become a sponsor