NeVibeCode · 252 items
MCP servers for Science and research
MCP servers for Science and research: what each one does, an install command and example prompts.
endnote-mcp MCP server Gives your agent an EndNote library it can query: record lookup, page-level PDF reading, citations and bibliographies. The index stays on your disk.
CX Codex +1
★ 56repo stars
OpenSTAAD MCP Server MCP server Connects AI assistants to active Bentley STAAD.Pro models via the OpenSTAAD API. Automates load definition and member property assignments locally.
CX Codex +1
★ 53repo stars
scopus-mcp MCP server An MCP server that plugs the Elsevier Scopus API into your assistant, so it can search papers, pull abstracts and look up authors.
CX Codex +1
★ 47repo stars
foehn MCP server foehn lets an AI agent query Switzerland’s open weather data from MeteoSwiss. Use it to ask about station readings, forecasts, or radar data in chat.
CX Codex +1
★ 45repo stars
ChatSpatial MCP server ChatSpatial lets an MCP client run spatial transcriptomics analyses through schema-defined tools. Use it to explore spatial data without asking a model to invent analysis scripts.
CX Codex +1
★ 45repo stars
mcp-server-zotero-dev MCP server Wires your AI assistant into a running Zotero 7+ so it can run JS, inspect the UI, read logs and rebuild the plugin you are working on.
CX Codex +1
★ 40repo stars
galaxy-mcp MCP server Links AI clients with the Galaxy bioinformatics platform. Run analysis tools, manage histories, and track complex scientific pipelines right from the chat.
CX Codex +1
★ 39repo stars
osint-agent-skills MCP server Turns your coding agent into an OSINT analyst with methodologies, pivot playbooks and report templates. Useful when you need cited findings instead of confident prose.
CX Codex +1
★ 43repo stars
MCP Zotero MCP server Connects an AI agent to a Zotero library for source searches, DOI-based paper additions, and PDF work. It also provides tools for adding citations to Word documents.
CX Codex +1
★ 38repo stars
AIRAS MCP server Automates machine learning workflows from academic paper review to final publication. Pre-registers hypotheses in Git and validates numerical metrics via CI.
CX Codex +1
★ 38repo stars
DeepPVMapper MCP server Exposes an open registry of over 1.14M rooftop solar detections across France to your AI assistant. It allows querying solar capacity and orientation with natural language.
CX Codex +1
★ 37repo stars
prismAId MCP MCP server Drives protocol-driven literature reviews with generative models. Handles paper screening, format conversion, and PRISMA 2020 protocol validation.
CX Codex +1
★ 31repo stars
Hyades MCP server Converts LaTeX equations into multi-line Unicode text art or ASCII. Useful for terminal windows and source code comments.
CX Codex +1
★ 30repo stars
Arcmira: YouTube Transcript Search MCP server Search YouTube and podcast transcripts for quotes, mentions, sponsors, ad reads, and speaker appearances. Useful when an agent needs sourced media research.
CX Codex +1
★ 76repo stars
PubMed Search MCP server An MCP server that connects your agent to PubMed, Europe PMC, OpenAlex and CORE: article search, citations, full texts and figure captions.
CX Codex +1
★ 28repo stars
fulltext-article-downloader MCP server Pulls a paper's full text from a DOI, arXiv, PMC or OpenReview id and confirms the returned file is the one you asked for. Use it when an agent needs the article itself, not its abstract.
CX Codex +1
★ 28repo stars
NetLogo MCP MCP server This MCP server lets an AI create, run, and inspect NetLogo agent-based models in conversation. Use it for simulations and parameter experiments.
CX Codex +1
★ 27repo stars
WebSearch MCP Server MCP server Runs multi-engine internet and academic searches without any API keys. Parses PDF files and safely retrieves external web pages for the agent.
CX Codex +1
★ 26repo stars
Multisim MCP MCP server Lets an AI agent drive Multisim: build a circuit from a spec, run DC/AC/TRAN, and get a report with waveforms.
CX Codex +1
★ 26repo stars
ChemDraw MCP (unofficial) MCP server Turns molecule names and SMILES into 2D structures, reaction schemes, and comparisons. Rendering runs locally with RDKit.
CX Codex +1
★ 24repo stars
blender-optics-simulator MCP server Connects a Blender optical bench simulation to coding agents over MCP. Useful for automated beam tracing, mirror alignment, and hardware layout.
CX Codex +1
★ 24repo stars
Semantic Scholar MCP Server MCP server Connects AI assistants to 200M+ academic papers on Semantic Scholar. It searches literature, traces citation networks, and pulls author details directly inside your coding client.
CX Codex +1
★ 23repo stars
PyreCrawl MCP server A self-hosted MCP server that turns web pages into markdown for your agent, gets past Cloudflare and tracks page changes. No API keys involved.
CX Codex +1
★ 22repo stars
Books & Papers MCP Server MCP server Federates searches across scholarly databases and catalogs, generates formatted citations, and reads chapters. Useful for literature reviews directly inside your AI client.
CX Codex +1
★ 24repo stars
Jaxonomy — hybrid dynamical systems on JAX MCP server Jaxonomy runs differentiable simulations of hybrid dynamical systems on JAX. It helps engineers design control loops and optimize trajectories through differential equations.
CX Codex +1
★ 21repo stars
ENCODE Toolkit MCP server Twenty tools and 47 skills over the ENCODE Project: find experiments, pull data, run analysis pipelines and cross-reference other genomics databases.
CX Codex +1
★ 22repo stars
criterion MCP server A hosted MCP server that answers natural-language questions over 6,236 Quran verses and hadith from six collections. Every hit comes with a source link.
CX Codex +1
★ 20repo stars
Dense Evolution MCP server Runs quantum circuit simulations, VQE routines, and molecular Hamiltonians through agent tooling. It handles circuits up to 28 qubits with disk-spill memory fallbacks.
CX Codex +1
★ 19repo stars
AEGIS Academic Integrity Checker MCP server Checks papers for citation issues, copied text, AI-generated writing and venue rules. It is useful when documents must stay on your machine.
CX Codex +1
★ 19repo stars
opentargets MCP server Query Open Targets for targets, diseases, drugs, and supporting evidence from an AI coding client. Useful for investigating gene-disease links or possible drug repurposing.
CX Codex +1
★ 19repo stars
wet MCP server Gives agents web search through SearXNG, multi-step page extraction, and version-aware library documentation search.
CX Codex +1
★ 20repo stars
viznoir MCP server Lets an AI agent drive VTK's rendering pipeline headlessly: read simulation files, apply filters, render images and export animations.
CX Codex +1
★ 19repo stars
rosetta-mcp-server MCP server An MCP server that lets your coding assistant run RosettaScripts protocols, score protein structures, and map code between PyRosetta and Biotite.
CX Codex +1
★ 19repo stars
GeoSpark MCP server GeoSpark gives coding agents tools for geospatial calculations and data checks. Use it when a map-related answer needs computed results rather than a model’s guess.
CX Codex +1
★ 20repo stars
Sidereon MCP server An MCP server for GNSS positioning, orbit work, and astrodynamics. Use it for satellite passes, RINEX-based solves, and orbital analysis.
CX Codex +1
★ 18repo stars
FAOSTAT MCP MCP server Connects AI coding agents to UN agricultural statistics for 245 countries. It lets you retrieve crop, trade, food security, and emissions metrics via chat.
CX Codex +1
★ 18repo stars
SageMath MCP server An MCP server that gives your agent a sandboxed SageMath session which keeps state between calls, with 40 tools and a checker for claimed results.
CX Codex +1
★ 18repo stars
ETABS MCP MCP server Wires an agent into CSI ETABS v22+ so it can build a model, assign loads, run analysis and read results through the official API.
CX Codex +1
★ 19repo stars
Qiskit MCP Server MCP server An MCP server for inspecting and transpiling quantum circuits with Qiskit. Use it when circuits must be adapted to a target basis or topology.
CX Codex +1
★ 41repo stars
Qiskit IBM Transpiler MCP Server MCP server An MCP server that hands your coding agent the Qiskit IBM transpiler: routing and AI synthesis passes for IBM Quantum backends. Useful when circuits must run on actual hardware.
CX Codex +1
★ 41repo stars
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