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skill CX Codex GP ChatGPT official · OpenAI

eqtl-catalogue-skill — Codex skill for eQTL Catalogue queries

Query the public eQTL Catalogue API for associations and documented metadata, then get a concise summary. Useful for focused eQTL research.

Install into Codex · Skills CLI (Vercel) All methods and platforms ↓ 
npx skills add openai/plugins --skill eqtl-catalogue-skill -a codex
Open on GitHub

What eqtl-catalogue-skill does

This skill sends requests to the eQTL Catalogue API through scripts/rest_request.py. It targets association lookups and documented metadata endpoints, favouring filtered queries over broad lists. By default, the agent turns the script’s JSON response into a short Markdown summary; raw JSON is returned when explicitly requested.

Requests use an API address and a path. Examples cover study listings and association searches using gene_id, rsid, or variant_id; the script also supplies compatibility parameters for association calls. The public API has returned 400 and 500 errors and timed out with documented parameters, so upstream failures can interrupt a query. The skill is listed for Codex and ChatGPT.

What it helps with

  • look up associations for a gene and variant
  • browse studies in the catalogue
  • summarize an API response in Markdown
  • retrieve data from documented metadata endpoints

Example prompts for the agent

  • Find associations for gene ENSG00000141510 and variant rs7903146.
  • Show a few entries from the eQTL Catalogue study list.
  • Summarize the association results for rs7903146.

How to install eqtl-catalogue-skill

1Skills CLI (Vercel)

npx skills add openai/plugins --skill eqtl-catalogue-skill -a codex

2Manually: put the files in place

.agents/skills/eqtl-catalogue-skill/SKILL.md

For all projects use ~/.agents/skills/

Step by step, with commands for each platform: Codex skills: how to install, where they live, how to call them

Questions about eqtl-catalogue-skill

How do I install eqtl-catalogue-skill in Codex?

Run npx skills add openai/plugins --skill eqtl-catalogue-skill. To name the agent explicitly, run npx skills add openai/plugins --skill eqtl-catalogue-skill -a codex.

What does eqtl-catalogue-skill do?

It queries the eQTL Catalogue API for associations and data from documented metadata endpoints. The default response is a concise Markdown summary.

Why might an eQTL Catalogue request fail?

The public API has returned 400 and 500 errors or timed out, including with documented parameters. The skill passes upstream errors through.

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