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NeVibeCode · 676 items

Skills for Science and research

Skills for Science and research: what each one does, an install command and example prompts.

table-generation lingzhi227 skill Turns JSON or CSV experiment results into booktabs-styled LaTeX tables with bold best values, captions and labels. CX Codex +1 1,600installs related-work-writing lingzhi227 skill Drafts publication-ready Related Work sections by grouping literature thematically and contrasting previous approaches with your method. CX Codex +1 1,600installs earth2studio-create-diagnostic NVIDIA Earth-2 Team skill Builds Earth2Studio diagnostic model wrappers for single-step ML transforms. Useful when integrating derived, AutoModel, or generative diagnostics without time-stepping. CX Codex +1 576installs academic-writing poemswe skill A skill for academic writing that strips template phrasing and pushes for names, numbers and cited evidence instead of generalities. CX Codex +1 1,000installs stata-regression Awesome Econ AI Community skill Generate Stata code for regression models, data checks, and exportable results tables. Use it when preparing model specifications for a paper or report. CX Codex +1 420installs pp-arxiv Hiten Shah skill A skill that lets your agent search arXiv and pull paper metadata. Handy when you need recent work in a category or one specific paper by ID. CX Codex +1 377installs cnki-export cookjohn skill Pulls citation data off a CNKI page and pushes it to Zotero or saves an RIS file. Useful when you are building a bibliography from Chinese journals. CX Codex +1 412installs cnki-parse-results cookjohn skill Extract structured details from an open CNKI results page. Useful when you need article titles, authors, journals and citation counts after running a search. CX Codex +1 385installs tooluniverse-clinical-guidelines mims-harvard skill A skill that pulls clinical practice guidelines from NICE, WHO, NCCN, AHA, ADA and more, then ranks them by source authority. CX Codex +1 491installs tooluniverse mims-harvard skill Routes biomedical research queries to specialized skills and extracts authoritative cell outputs from executed notebooks. CX Codex +1 479installs stata-data-cleaning Awesome Econ AI Community skill Generates reproducible Stata do-files for empirical research, covering missing value replacement, outlier capping, and data integrity checks. CX Codex +1 351installs tooluniverse-clinical-trial-design mims-harvard skill The skill scores a clinical trial design across six dimensions and returns a feasibility report with enrollment projections. CX Codex +1 456installs semanticscholar-skill Agents365-ai skill Searches academic papers, authors, and citation graphs using the Semantic Scholar API. Helps agents explore scientific literature, gather references, and get recommendations. CX Codex +1 3,400installs paper-fetch Agents365-ai skill Finds and downloads research paper PDFs from a DOI, title, or DOI list. Handy when you need to retrieve a paper from available sources. CX Codex +1 3,400installs tooluniverse-drug-drug-interaction mims-harvard skill Works through drug-drug interactions: mechanism, severity, a 0–100 risk score and what to do about the prescription. Built for polypharmacy reviews. CX Codex +1 452installs r-econometrics Awesome Econ AI Community skill Generates R code for causal inference and panel data using fixest, complete with diagnostics and publication tables. Useful for IV, DiD, and RDD research designs. CX Codex +1 331installs tooluniverse-disease-research mims-harvard skill Builds a cited disease report covering genetics, pathways, drugs and clinical trials. Handy for rare-disease profiles where memory is not enough. CX Codex +1 437installs cnki-navigate-pages cookjohn skill Pages through CNKI search results and switches the sort order to date, citations or downloads. Handy once you have read past the first page of hits. CX Codex +1 330installs cnki-journal-toc cookjohn skill Lists the papers in a given CNKI journal issue and can pull the scanned original table of contents. CX Codex +1 330installs tooluniverse-systems-biology mims-harvard skill A skill for pathway and systems biology work: enrichment on a gene list, protein-to-pathway mapping, SBML model search. Useful when you have RNA-seq or proteomics hits. CX Codex +1 433installs tooluniverse-protein-structure-retrieval mims-harvard skill Retrieves and evaluates protein structures across RCSB PDB, PDBe, AlphaFold, and SWISS-MODEL. Helps select experimental or predicted models for modeling. CX Codex +1 433installs tooluniverse-network-pharmacology mims-harvard skill Builds and analyses compound-target-disease networks to find drug repurposing candidates and explain mechanism through network metrics. CX Codex +1 429installs tooluniverse-precision-oncology mims-harvard skill Turns a molecular profile into treatment options: approved and investigational drugs, resistance mechanisms, matching trials, each with an evidence level. CX Codex +1 424installs tooluniverse-epigenomics mims-harvard skill Processes DNA methylation, histone modifications, ChIP-seq, and ATAC-seq data. It computes CpG density and chromatin stats without row-deduplication errors. CX Codex +1 422installs tooluniverse-pharmacovigilance mims-harvard skill Performs systematic drug safety and adverse event analysis using FAERS, FDA warnings, and SIDER data. Computes disproportionality metrics via Python. CX Codex +1 420installs tooluniverse-chemical-compound-retrieval mims-harvard skill This skill pulls chemical compound data from PubChem and ChEMBL: names, SMILES, InChI, CID, properties and bioactivity. Useful when you need to verify a substance against databases instead of guessing. CX Codex +1 417installs asta Agents365-ai skill Searches the Semantic Scholar academic graph via AI2's Asta MCP server. Finds citations, author publications, and 500-word snippets. CX Codex +1 3,100installs tooluniverse-target-research mims-harvard skill Gathers target intelligence across 9 research paths: tissue expression, genetic evidence, safety, and druggability. Useful for target evaluation in drug discovery projects. CX Codex +1 409installs create-tooluniverse-skill mims-harvard skill Walks you through seven phases of building a ToolUniverse skill, from domain analysis and tool testing to packaging. Aimed at maintainers. CX Codex +1 409installs tooluniverse-spatial-transcriptomics mims-harvard skill Runs spatial transcriptomics analysis on Visium, MERFISH, seqFISH and Slide-seq data: spatially variable genes, tissue domains and neighbourhood structure. CX Codex +1 408installs tooluniverse-proteomics-analysis mims-harvard skill A skill for mass-spec proteomics: protein identification, quantification, differential expression and pathway enrichment. CX Codex +1 408installs tooluniverse-rare-disease-diagnosis mims-harvard skill Turns a patient phenotype into a ranked differential: HPO term matching, Orphanet and OMIM lookups, gene panel prioritization, ACMG variant interpretation. CX Codex +1 406installs tooluniverse-expression-data-retrieval mims-harvard skill Finds gene expression and omics datasets in ArrayExpress and BioStudies, scoring replicates and metadata quality. Helps locate RNA-seq and microarray experiments for analysis. CX Codex +1 405installs tooluniverse-rnaseq-deseq2 mims-harvard skill A skill for RNA-seq differential expression with DESeq2, edgeR and limma-voom: DEG lists, fold changes and Venn sets across groups. CX Codex +1 405installs tooluniverse-clinical-trial-matching mims-harvard skill This skill turns a patient's molecular profile and clinical state into a ranked list of clinical trials with evidence tiers and match scores. CX Codex +1 404installs tooluniverse-statistical-modeling mims-harvard skill Runs statistical models on biomedical data, including natural splines, logistic regression, power calculations, and clinical trial adverse event severity tests. CX Codex +1 402installs journal-abbrev Agents365-ai skill Looks up journal name abbreviations and expands them back, using ISO 4 and MEDLINE. Handy when you prepare a reference list or clean up BibTeX. CX Codex +1 3,000installs tooluniverse-multi-omics-integration mims-harvard skill A skill that pulls several omics layers into one analysis: matches samples, runs cross-omics correlations, clusters patients and writes a report. CX Codex +1 398installs tooluniverse-protein-therapeutic-design mims-harvard skill Guides AI-driven de novo protein design using RFdiffusion and ProteinMPNN. Generates structural backbones, samples sequences, and validates folds before lab experiments. CX Codex +1 398installs tooluniverse-drug-repurposing mims-harvard skill A skill that hunts for new indications for approved drugs and ranks the candidates by strength of evidence. CX Codex +1 397installs

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