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NeVibeCode · 2,385 items

Skills for AI and ML

Skills for AI and ML: what each one does, an install command and example prompts.

dhdna-profiler K-Dense-AI skill A skill that applies the DHDNA framework to describe reasoning and writing patterns in text. Use it when you need reflection on thinking style, a cognitive-preference profile, or comparison of how texts construct arguments. CX Codex +1 1,900installs scvi-tools K-Dense-AI skill Guides probabilistic modelling for single-cell omics data. Use it for batch integration, cell annotation, multimodal data, and model-based uncertainty. CX Codex +1 1,900installs esm K-Dense-AI skill A skill for Biohub's esm Python SDK: ESM3 protein generation, ESMC embeddings and ESMFold2 all-atom folding, run locally or through a hosted client. CX Codex +1 1,900installs pyhealth K-Dense-AI skill Builds and validates PyHealth pipelines for clinical data: EHR, signals, imaging, medical codes. Useful when modelling mortality, readmission or length of stay. CX Codex +1 1,900installs torchdrug K-Dense-AI skill Helps build and debug TorchDrug 0.2.1 pipelines for molecular graphs and proteins. Use it when training property prediction, molecule generation, or retrosynthesis models. CX Codex +1 1,900installs imaging-data-commons K-Dense-AI skill Skill for searching and downloading public medical imaging data from the NCI Imaging Data Commons repository. Works with DICOM, CT, MR, PET and digital pathology without authentication for basic queries. CX Codex +1 1,900installs molecular-dynamics K-Dense-AI skill Runs molecular dynamics in OpenMM and analyses the trajectories with MDAnalysis: RMSD, RMSF, contact maps, free energy surfaces. CX Codex +1 1,900installs pydeseq2 K-Dense-AI skill Skill for differential expression analysis of RNA-seq count data. Performs negative-binomial GLM with explicit biological replicates, design formulas, and statistical contrasts. CX Codex +1 1,900installs arboreto K-Dense-AI skill Ranks candidate regulator-target pairs from expression data: GRNBoost2 with gradient boosting, GENIE3 with random forests. Needs a gene table and a TF list. CX Codex +1 1,900installs vaex K-Dense-AI skill A skill for columnar analysis on a single machine when data exceeds available memory. Process HDF5, Arrow, CSV, and Parquet through lazy Vaex expressions, virtual columns, and streamed statistics. CX Codex +1 1,900installs cellxgene-census K-Dense-AI skill A skill for programmatic access to CZ CELLxGENE Census, a vast catalog of standardized single-cell transcriptomics data. Query metadata, gene expression, and embeddings without downloading entire datasets. CX Codex +1 1,900installs deepchem K-Dense-AI skill Builds molecular property prediction and MoleculeNet pipelines in DeepChem 2.8.0. Useful for SMILES featurization and scaffold-based ML. CX Codex +1 1,900installs pufferlib K-Dense-AI skill Skill for PufferLib: choose between native 5.0, PyPI 3.0.0, or pinned 4.0, validate Gymnasium contracts, adapt environments, and review checkpoints safely. Requires Python 3.10+ and native C/CUDA for training. CX Codex +1 1,900installs deeptools K-Dense-AI skill A skill that turns sequencing data into coverage tracks, QC metrics and heatmaps around TSS and peaks. CX Codex +1 1,900installs scanpy K-Dense-AI skill A skill with ready-made CLI scripts for the full single-cell RNA-seq workflow: QC, normalization, clustering, marker genes, visualization. Use it when you want Scanpy results without writing the pipeline by hand. CX Codex +1 1,900installs modal K-Dense-AI skill Guides Python workloads on Modal, from web endpoints to GPU model training. Use it when deploying cloud jobs through the Modal SDK. CX Codex +1 1,900installs clinical-decision-support K-Dense-AI skill Builds and checks research-only clinical decision-support artifacts: evidence profiles, cohorts, survival plans, de-identification. Not for patient care. CX Codex +1 1,900installs anndata K-Dense-AI skill Skill to create, read, and transform annotated data matrices in h5ad and Zarr formats. Integrates with the scverse ecosystem for transcriptomics and other metadata-rich data analysis. CX Codex +1 1,900installs hypogenic K-Dense-AI skill Skill to plan and audit HypoGeniC, a tool that generates candidate textual hypotheses from labeled datasets using LLM. Use it if you work with the hypogenic package, its task configs, or HypoBench datasets. CX Codex +1 1,900installs geomaster K-Dense-AI skill Guides geospatial research work with satellite imagery, vector and raster GIS data, coordinate systems, spatial statistics, and Earth observation models. CX Codex +1 1,900installs pymoo K-Dense-AI skill A skill that drives pymoo from your agent: algorithm choice, problem setup, constraints and Pareto front analysis. Useful when objectives conflict. CX Codex +1 1,900installs stable-baselines3 K-Dense-AI skill A skill for training reinforcement learning agents with Stable Baselines3. Supports PPO, SAC, DQN and other algorithms, works with Gymnasium custom environments and vectorized rollouts. CX Codex +1 1,900installs research-lookup K-Dense-AI skill Collects verified academic articles and references for a manuscript or review when you need 60+ sources. Uses parallel search, extracts data from PDFs and web sources, supports deep exhaustive search and optional Perplexity. CX Codex +1 1,900installs torch-geometric K-Dense-AI skill Guides work with PyTorch Geometric graph neural networks, from graph data setup to classification tasks. Use it when a project relies on torch_geometric. CX Codex +1 2,000installs open-notebook K-Dense-AI skill Organizes research notes, citations, and document chat using self-hosted storage and AI providers. Helpful for managing an Open Notebook setup directly from your agent. CX Codex +1 2,000installs scikit-survival K-Dense-AI skill A skill that walks an agent through scikit-survival 0.28.0: building, tuning and auditing survival models on censored data, with metrics that account for censoring. CX Codex +1 2,000installs copilotkit CopilotKit skill A skill that sends your agent to the live CopilotKit documentation and source instead of letting it answer from memory. CX Codex +1 767installs mem0-integrate mem0ai skill Wires Mem0 memory into an existing backend repository via a TDD pipeline. Sets up a feature branch, writes tests first, and guards new logic behind a flag. CX Codex +1 398installs ads-microsoft AgriciDaniel skill Audits Microsoft Ads, Bing Ads, UET, and audience network campaigns: measurement, conversions, Google imports, keywords, creative, bidding, and budgets. Read-only; use ads-optimize to make changes. CX Codex +1 3,800installs azure-speech-to-text calesthio skill Transcribes local audio files into text with word-level timestamps and speaker diarization using Azure AI Speech. Speeds up subtitle creation and audio processing in OpenMontage pipelines. CX Codex +1 783installs langgraph-persistence langchain-ai skill A Claude Code skill for LangGraph persistence: wiring a checkpointer, keeping conversations apart by thread_id, and replaying older graph state. CX Codex +1 18,000installs langgraph-fundamentals langchain-ai skill Skill for writing LangGraph code across platforms. Covers StateGraph, state schemas, nodes, edges, Command, Send, invoke, streaming, and error handling. CX Codex +1 18,000installs rewardkit harbor-framework skill Write Harbor task verifiers with Python criteria or TOML judges, then turn their results into a reward score. Use it when building or changing a task’s tests/ directory. CX Codex +1 1,300installs langchain-rag langchain-ai skill Equips coding agents with reference RAG implementations in Python and TypeScript using LangChain loaders, splitters, and vector stores. CX Codex +1 17,500installs hugging-science K-Dense-AI skill A skill to find and evaluate scientific datasets, models, and interactive demos via the Hugging Science catalog. Use it when you need an ML resource for biology, chemistry, genomics, materials science, climate, or physics. CX Codex +1 1,800installs glycoengineering K-Dense-AI skill A skill for working through N- and O-glycosylation sites in protein sequences: motif scanning, mutation planning and predictor prep. CX Codex +1 1,800installs langchain-fundamentals langchain-ai skill Guides LangChain agent work with create_agent(), tools, and middleware. Use it when you need saved conversation state, approval flows, or error handling. CX Codex +1 17,400installs langgraph-human-in-the-loop langchain-ai skill Skill for building LangGraph workflows that pause and wait for human input. Use it to show agent output, request approval, or validate user responses before continuing. CX Codex +1 17,200installs mathmodel-figure-templates jihe520 skill Runs packaged Python and matplotlib scripts to generate publication-grade scientific figures. Useful when you need Taylor diagrams, ROC curves, or correlation grids quickly. CX Codex +1 1,700installs prompt-engineer sickn33 skill Transforms unstructured prompts into structured prompts using frameworks like RTF, RISEN, and Chain of Thought. Helpful when a task needs clearer instructions. CX Codex +1 1,600installs

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