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nature-data — Claude Code skill: what it does, how to install

nature-data drafts or audits manuscript data and code availability statements, dataset access routes, repository plans, and FAIR metadata.

Install into Claude Code · Skills CLI (Vercel) All methods and platforms ↓
npx skills add Yuan1z0825/nature-skills --skill nature-data -a claude-code
Open on GitHub

What nature-data does

nature-data runs an eight-step workflow for manuscript data sharing. It identifies the journal and article type, inventories supporting datasets, assigns each dataset an access route, and helps choose a repository and identifier strategy. It then drafts a Data Availability statement, maps datasets to locations, adds formal dataset citations, and checks FAIR metadata.

The skill routes work through manifest.yaml, core guidance in static/core/stance.md and static/core/workflow.md, plus on-demand reference files. It must preserve supplied repository identifiers and access conditions when auditing an existing statement. It does not invent DOIs, accession numbers, repository names, licences, embargo dates, ethics approvals, access committees, or data-use conditions.

Install it when a manuscript needs a data-sharing plan or statement audit. Skip it for general data cleaning or statistical analysis.

What it helps with

  • draft a Data Availability statement
  • assign datasets to access routes
  • choose a repository and identifier strategy
  • audit FAIR metadata and dataset citations
  • review an existing data-sharing statement

Example prompts for the agent

  • Draft a Data Availability statement for this manuscript and map every dataset to its access location.
  • Audit the access routes, identifiers, and restrictions in this statement.
  • Create a repository plan and flag fields that require confirmed source details.

How to install nature-data

1Skills CLI (Vercel)

npx skills add Yuan1z0825/nature-skills --skill nature-data -a claude-code

2Manually: put the files in place

~/.claude/skills/nature-data/SKILL.md

Copy the whole skill folder; for one project use .claude/skills/nature-data/

From the same set18

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Questions about nature-data

How do I install nature-data in Claude Code?

Run npx skills add Yuan1z0825/nature-skills --skill nature-data -a claude-code. The skill file is placed at ~/.claude/skills/nature-data/SKILL.md.

What does nature-data do?

It drafts and audits manuscript Data Availability and Code Availability material, dataset access routes, repository plans, dataset citations, and FAIR metadata.

What must nature-data avoid inventing?

It must not invent DOIs, accession numbers, repository names, licences, embargo dates, ethics approvals, access committees, or data-use conditions.

Source text

SKILL.md · Apache-2.0
---
name: nature-data
description: "Draft or audit manuscript Data/Code Availability statements, dataset access routes, repository plans, and FAIR metadata. Use for 数据可用性声明、数据共享、数据仓库选择 and dataset citations; not general data cleaning or statistical analysis."
metadata:
  author: Yuan1z skill, refactored into static/dynamic layers
---

# Nature Data Availability — Router

## Routing protocol

For a new task, load the core and matching resources below. Reuse already loaded guidance on follow-ups; load more only when the task needs it.

### 1. Load the manifest and the core layer

Read [manifest.yaml](manifest.yaml). Then read every file listed under `always_load`:

- `static/core/stance.md` — what the data-availability package is, the default stance, and the source hierarchy.
- `static/core/workflow.md` — the eight-step workflow and the output format.

### 2. No content axis — confirm journal and language inline

Unlike nature-writing or nature-figure, nature-data has no fragment axis. Its variation is handled at runtime, not by loading different content bodies:

- **journal/article type** — if journal-specific instructions conflict with this skill, follow the journal.
- **access route** — each dataset is classified into one route (public repository, controlled access, within paper, reused public, third-party restricted, justified request, or not applicable).
- **user language** — if the user writes Chinese or requests Chinese guidance, read `static/core/chinese-mode.md` and add the 中文核对 block unless the user requested statement text only.

### 3. Run the workflow

For a wording edit or audit of one existing statement, preserve supplied repository identifiers
and access conditions and check the affected claims. Report gaps relevant to that statement;
do not require a full study-wide dataset inventory or repository redesign. Use the complete
workflow below for a new data-sharing plan, full statement, or submission audit.

Follow the eight-step workflow in `core/workflow.md`: identify the journal, inventory every supporting dataset, classify each into one access route, choose repository and identifier strategy before drafting, draft the statement with explicit dataset-to-location mapping, add formal dataset citations, run the FAIR/metadata audit, and return ready-to-paste text plus unresolved fields.

Do not invent DOIs, accession numbers, repository names, licences, embargo dates, ethics approvals, access committees, or data-use conditions. Flag "available upon request" as weak unless there is a specific legal, ethical, commercial, or third-party restriction.

### 4. Reach for references only when needed

The files under `references/` are deep references, not defaults. Open them on demand per the `references.on_demand` table in the manifest — for example `references/policy-principles.md` for the governing rules and edge cases, `references/repository-and-identifiers.md` for repository/accession/DOI choices, `references/statement-patterns.md` for ready-to-adapt statements, `references/fair-metadata-checklist.md` for the FAIR audit, `references/chinese-author-alignment.md` for Chinese wording, and `references/source-basis.md` to justify a rule with its official source.

When the target is the flagship journal Nature, also open
`references/nature-article-requirements.md` for statement placement,
mandatory-deposition routing, central-code review access, materials and
structure-file checks.

When the target is Nature Machine Intelligence, open
`../nature-shared/journal-formats/nature-machine-intelligence.md`. Enforce a
Data Availability statement and a separate `Code availability` section after
it and before references; check reviewer access, precise restrictions,
repository/identifier quality and the Software Submission Checklist for newly
developed central code.

© Yuan1z skill, refactored into static/dynamic layers · Apache-2.0 · Yuan1z0825/nature-skills

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