NeVibeCode · 1,439 items
Skills for Data and databases
Skills for Data and databases: what each one does, an install command and example prompts.
cellxgene-census skill A skill for programmatic access to CZ CELLxGENE Census, a vast catalog of standardized single-cell transcriptomics data. Query metadata, gene expression, and embeddings without downloading entire datasets.
CX Codex +1
1,900installs
pydicom skill Inspects and processes local DICOM files, transfer syntaxes, and pixel data. Enforces strict metadata allowlists to prevent sensitive patient data from leaking into logs.
CX Codex +1
1,900installs
astropy skill Helps an agent write and debug Astropy code for astronomy data. Use it for coordinate transforms, FITS files, tables, and time calculations.
CX Codex +1
1,900installs
rdkit skill Guides coding agents through cheminformatics tasks in Python, including SMILES parsing, descriptor calculations, and 3D coordinate generation.
CX Codex +1
1,900installs
gget skill Bioinformatics skill providing unified access to over 20 genomic databases via CLI and Python. Useful for gene lookups, alignments, and protein structure downloads.
CX Codex +1
1,900installs
anndata skill Skill to create, read, and transform annotated data matrices in h5ad and Zarr formats. Integrates with the scverse ecosystem for transcriptomics and other metadata-rich data analysis.
CX Codex +1
1,900installs
bioservices skill Guides Python workflows using BioServices to query biological databases. Useful for mapping protein IDs, extracting KEGG pathways, and resolving chemical identifiers.
CX Codex +1
1,900installs
geomaster skill Guides geospatial research work with satellite imagery, vector and raster GIS data, coordinate systems, spatial statistics, and Earth observation models.
CX Codex +1
1,900installs
scikit-bio skill Analyzes biological sequences, alignments, and phylogenetic trees directly in your terminal. Helpful for microbiome workflows and ecology data.
CX Codex +1
1,900installs
geopandas skill Guides Python geospatial workflows using GeoPandas, audits vector geometries, and verifies CRS transformations before execution.
CX Codex +1
1,900installs
biopython skill Automates computational biology workflows: parses sequence files, runs alignments, and fetches records via NCBI Entrez.
CX Codex +1
2,000installs
scikit-survival skill A skill that walks an agent through scikit-survival 0.28.0: building, tuning and auditing survival models on censored data, with metrics that account for censoring.
CX Codex +1
2,000installs
langchain-rag skill Equips coding agents with reference RAG implementations in Python and TypeScript using LangChain loaders, splitters, and vector stores.
CX Codex +1
17,500installs
primekg skill Wraps the PrimeKG precision-medicine CSV in pandas helpers, so the agent can look up typed nodes, neighbours, disease summaries and short paths without leaving the repo.
CX Codex +1
1,900installs
mathmodel-figure-templates skill Runs packaged Python and matplotlib scripts to generate publication-grade scientific figures. Useful when you need Taylor diagrams, ROC curves, or correlation grids quickly.
CX Codex +1
1,700installs
firebase skill Guides Firebase architecture, Firestore security rules, and Cloud Functions based on read-heavy query patterns and pricing limits.
CX Codex +1
1,600installs
fine-tuning-expert skill A skill for LLM fine-tuning: prepares datasets, configures LoRA and QLoRA adapters, runs training and evaluates the result.
CX Codex +1
4,200installs
geofeed-tuner
official skill Validates and refines CSV IP geolocation feeds against RFC 8805 standards. Useful for network operators and cloud providers publishing geofeeds.
1,300installs
ads-attribution skill Audits advertising attribution across platforms and blocks totals built from incompatible conversion reports. Use it when GA4, MMP, or platform figures disagree.
CX Codex +1
3,400installs
graphql-architect skill Designs schema-first GraphQL APIs, Apollo Federation 2.5+ subgraphs, and DataLoader resolvers to eliminate N+1 queries.
CX Codex +1
4,000installs
ads-amazon skill Audits Amazon Ads profiles and campaign signals, from targeting to ACOS and TACOS. Use it when reviewing account structure, reporting, and proposed campaign changes.
CX Codex +1
3,300installs
business-analyst skill A skill that turns your agent into a business analyst: KPI frameworks, unit economics, A/B tests and exec-ready write-ups.
CX Codex +1
1,500installs
backtesting-trading-strategies skill Runs a trading strategy over historical data and reports risk metrics before any real capital is on the line.
CX Codex +1
4,700installs
clickhouse-best-practices skill A skill with rules for reviewing ClickHouse schemas, queries, and configurations. Helps agents avoid common mistakes in table design, JOIN optimization, and data batching.
CX Codex +1
21,700installs
ml-pipeline skill Sets up production-grade ML pipelines: configures MLflow experiment tracking, generates Kubeflow or Airflow DAGs, and validates training datasets.
CX Codex +1
3,900installs
AgentDB Advanced Features skill Skill for distributed AgentDB systems: QUIC-synchronized nodes, multi-database management, custom distance metrics, and hybrid vector-plus-metadata search across AI agent networks.
CX Codex +1
1,100installs
AgentDB Performance Optimization skill Skill for vector database optimization in AgentDB: reduce memory 4–32x via quantization, speed up search 150x via HNSW indexing, add caching and batch inserts.
CX Codex +1
1,100installs
ReasoningBank with AgentDB skill Adds adaptive memory to coding agents using the AgentDB vector engine. Useful for recording agent execution paths, judging outcomes, and distilling recurring patterns.
CX Codex +1
1,100installs
V3 Memory Unification skill Pushes seven separate memory layers onto one AgentDB store with an HNSW index, then answers semantic queries through a single service.
CX Codex +1
1,100installs
AgentDB Memory Patterns skill This skill gives AI agents persistent memory: AgentDB stores session history, learns from conversations, and restores context between runs.
CX Codex +1
1,100installs
AgentDB Vector Search skill A skill for fast semantic document retrieval using AgentDB's vector database. Use it for RAG systems, search engines, and knowledge bases where you need relevant results from large text collections.
CX Codex +1
1,100installs
spark-engineer skill Writes PySpark jobs and digs into why they crawl: DataFrame transforms, Spark SQL, skewed keys, streaming. Useful when a job burns itself on shuffle or runs out of memory.
CX Codex +1
3,800installs
file-conversion skill Converts local media, documents, and data formats using tools already installed on your machine. Prevents uploading files to third-party APIs.
CX Codex
3,100installs
firestore-rules-creation skill Creates and refactors Cloud Firestore Security Rules in firestore.rules. Use it when project queries and data access need rule coverage.
CX Codex +1
25,300installs
arize-dataset
official skill This skill manages Arize datasets and examples through ax. Use it for test sets, evaluation examples, and dataset exports.
1,100installs
arize-annotation
official skill Creates annotation schemas and review queues in Arize, then updates span labels through the Python SDK. Use it for human review workflows.
1,100installs
pathway-enrichment skill Runs pathway and gene-set enrichment analysis on gene lists or ranked data, finds over-represented GO terms, KEGG, Reactome, MSigDB. Needed after differential expression, CRISPR screens, or clustering.
CX Codex +1
1,400installs
experimental-design skill Helps you plan an experiment before collecting data: pick a design, randomize, block nuisance variation and lay out factor combinations. Useful while the study is still on paper.
CX Codex +1
1,400installs
bulk-rnaseq skill Prepares bulk RNA-seq reads, Salmon, and STAR outputs into validated gene-level count matrices for differential expression in PyDESeq2.
CX Codex +1
1,400installs
huggingface-datasets skill Guides Dataset Viewer API work for inspecting Hugging Face datasets, rows, statistics, and parquet links. Use it when an agent needs read-only dataset exploration.
CX Codex +1
2,400installs
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