Codex skills, plugins, subagents, slash commands and mcp servers

adaptyv K-Dense-AI skill Helps design protein characterization assays in Adaptyv Bio Foundry, check catalog targets, estimate run budgets, and collect test results. Claude Code Cursor GitHub Copilot 1,900installs arboreto K-Dense-AI skill Ranks candidate regulator-target pairs from expression data: GRNBoost2 with gradient boosting, GENIE3 with random forests. Needs a gene table and a TF list. Claude Code Cursor GitHub Copilot 1,900installs vaex K-Dense-AI skill A skill for columnar analysis on a single machine when data exceeds available memory. Process HDF5, Arrow, CSV, and Parquet through lazy Vaex expressions, virtual columns, and streamed statistics. Claude Code Cursor GitHub Copilot 1,900installs benchling-integration K-Dense-AI skill Automates Benchling laboratory data workflows using Python SDK 1.25.0 and REST API v2. Useful for managing registry entities, sample inventory, and ELN entries. Claude Code Cursor GitHub Copilot 1,900installs datamol K-Dense-AI skill Guides an agent through molecular data work with datamol and RDKit, from SMILES parsing to descriptors, clustering, and 3D conformers. Claude Code Cursor GitHub Copilot 1,900installs cellxgene-census K-Dense-AI skill A skill for programmatic access to CZ CELLxGENE Census, a vast catalog of standardized single-cell transcriptomics data. Query metadata, gene expression, and embeddings without downloading entire datasets. Claude Code Cursor GitHub Copilot 1,900installs deepchem K-Dense-AI skill Builds molecular property prediction and MoleculeNet pipelines in DeepChem 2.8.0. Useful for SMILES featurization and scaffold-based ML. Claude Code Cursor GitHub Copilot 1,900installs pufferlib K-Dense-AI skill Skill for PufferLib: choose between native 5.0, PyPI 3.0.0, or pinned 4.0, validate Gymnasium contracts, adapt environments, and review checkpoints safely. Requires Python 3.10+ and native C/CUDA for training. Claude Code Cursor GitHub Copilot 1,900installs pydicom K-Dense-AI skill Inspects and processes local DICOM files, transfer syntaxes, and pixel data. Enforces strict metadata allowlists to prevent sensitive patient data from leaking into logs. Claude Code Cursor GitHub Copilot 1,900installs scanpy K-Dense-AI skill A skill with ready-made CLI scripts for the full single-cell RNA-seq workflow: QC, normalization, clustering, marker genes, visualization. Use it when you want Scanpy results without writing the pipeline by hand. Claude Code Cursor GitHub Copilot 1,900installs rdkit K-Dense-AI skill Guides coding agents through cheminformatics tasks in Python, including SMILES parsing, descriptor calculations, and 3D coordinate generation. Claude Code Cursor GitHub Copilot 1,900installs modal K-Dense-AI skill Guides Python workloads on Modal, from web endpoints to GPU model training. Use it when deploying cloud jobs through the Modal SDK. Claude Code Cursor GitHub Copilot 1,900installs gget K-Dense-AI skill Bioinformatics skill providing unified access to over 20 genomic databases via CLI and Python. Useful for gene lookups, alignments, and protein structure downloads. Claude Code Cursor GitHub Copilot 1,900installs clinical-reports K-Dense-AI skill Builds draft skeletons for clinical reports and checks them with local scripts. Inputs must be synthetic, de-identified, or aggregate data. Claude Code Cursor GitHub Copilot 1,900installs anndata K-Dense-AI skill Skill to create, read, and transform annotated data matrices in h5ad and Zarr formats. Integrates with the scverse ecosystem for transcriptomics and other metadata-rich data analysis. Claude Code Cursor GitHub Copilot 1,900installs bioservices K-Dense-AI skill Guides Python workflows using BioServices to query biological databases. Useful for mapping protein IDs, extracting KEGG pathways, and resolving chemical identifiers. Claude Code Cursor GitHub Copilot 1,900installs hypogenic K-Dense-AI skill Skill to plan and audit HypoGeniC, a tool that generates candidate textual hypotheses from labeled datasets using LLM. Use it if you work with the hypogenic package, its task configs, or HypoBench datasets. Claude Code Cursor GitHub Copilot 1,900installs simpy K-Dense-AI skill Builds, tests, and inspects process-based discrete-event simulations using SimPy. Helpful for modeling service queues, logistics, and resource contention. Claude Code Cursor GitHub Copilot 1,900installs geomaster K-Dense-AI skill Guides geospatial research work with satellite imagery, vector and raster GIS data, coordinate systems, spatial statistics, and Earth observation models. Claude Code Cursor GitHub Copilot 1,900installs scikit-bio K-Dense-AI skill Analyzes biological sequences, alignments, and phylogenetic trees directly in your terminal. Helpful for microbiome workflows and ecology data. Claude Code Cursor GitHub Copilot 1,900installs consciousness-council K-Dense-AI skill Runs a council of thinking archetypes over a hard choice, keeps facts apart from assumptions and values, and returns a conditional recommendation. Claude Code Cursor GitHub Copilot 1,900installs stable-baselines3 K-Dense-AI skill A skill for training reinforcement learning agents with Stable Baselines3. Supports PPO, SAC, DQN and other algorithms, works with Gymnasium custom environments and vectorized rollouts. Claude Code Cursor GitHub Copilot 1,900installs geopandas K-Dense-AI skill Guides Python geospatial workflows using GeoPandas, audits vector geometries, and verifies CRS transformations before execution. Claude Code Cursor GitHub Copilot 1,900installs research-lookup K-Dense-AI skill Collects verified academic articles and references for a manuscript or review when you need 60+ sources. Uses parallel search, extracts data from PDFs and web sources, supports deep exhaustive search and optional Perplexity. Claude Code Cursor GitHub Copilot 1,900installs biopython K-Dense-AI skill Automates computational biology workflows: parses sequence files, runs alignments, and fetches records via NCBI Entrez. Claude Code Cursor GitHub Copilot 1,900installs torch-geometric K-Dense-AI skill Guides work with PyTorch Geometric graph neural networks, from graph data setup to classification tasks. Use it when a project relies on torch_geometric. Claude Code Cursor GitHub Copilot 1,900installs venue-templates K-Dense-AI skill Prepares journal manuscripts, conference papers, research posters, and grant documents with current venue rules and bundled LaTeX scaffolds. Verifies page limits, anonymity requirements, and formatting before submission. Claude Code Cursor GitHub Copilot 1,900installs open-notebook K-Dense-AI skill Organizes research notes, citations, and document chat using self-hosted storage and AI providers. Helpful for managing an Open Notebook setup directly from your agent. Claude Code Cursor GitHub Copilot 1,900installs scikit-survival K-Dense-AI skill A skill that walks an agent through scikit-survival 0.28.0: building, tuning and auditing survival models on censored data, with metrics that account for censoring. Claude Code Cursor GitHub Copilot 1,900installs business-analyst Seth Hobson subagent This subagent analyzes business data and helps shape KPIs, forecasts, and financial models. Use it to turn a business question into an analysis plan and recommendations. Claude Code Cursor 3,855installs appllama-usage Appllama (appllama.io) skill Guides Appllama MCP research for mobile apps: inspect real screens and flows before building or improving an interface. Claude Code Cursor GitHub Copilot 4,000installs sr-screener Imbad0202 skill Applies protocol-driven screening to study records for reviews. It manages double-blind screening of titles, abstracts, and full texts. Claude Code Cursor GitHub Copilot 449installs ads-photoshoot AgriciDaniel skill Generates rights-cleared paid-ad product photography from an authorized image and brand profile. Keeps packaging and logos intact across studio or lifestyle scenes. Claude Code Cursor GitHub Copilot 3,800installs ads-dna AgriciDaniel skill Reads an authorized website and writes a brand-and-offer profile for paid ads: voice, colors, type, claims. Handy before anyone writes the creative. Claude Code Cursor GitHub Copilot 3,800installs ads-microsoft AgriciDaniel skill Audits Microsoft Ads, Bing Ads, UET, and audience network campaigns: measurement, conversions, Google imports, keywords, creative, bidding, and budgets. Read-only; use ads-optimize to make changes. Claude Code Cursor GitHub Copilot 3,800installs ads-generate AgriciDaniel skill Generates paid-ad image assets from a validated brief and brand profile using a configured image provider. Keeps generation audits with hashes and safe zones. Claude Code Cursor GitHub Copilot 3,800installs ads-youtube AgriciDaniel skill Audits YouTube Ads campaign setup, video formats and measurement. Use it to review audiences, bidding, brand safety and creative controls. Claude Code Cursor GitHub Copilot 3,800installs ads-linkedin AgriciDaniel skill Skill for comprehensive LinkedIn Ads campaign review: conversion measurement, Insight Tag, audience targeting, lead generation, ABM, creative, bidding, budgets, pacing, and policy compliance. Claude Code Cursor GitHub Copilot 3,800installs ads-create AgriciDaniel skill Creates source-grounded ad concepts, copy, and creative briefs from your brand profile. It respects platform character limits and blocks hallucinated claims. Claude Code Cursor GitHub Copilot 3,800installs pinchtab pinchtab skill This skill uses PinchTab to control browser sessions, inspect page controls, fill forms, and export page output. Use it when an agent needs to act through a browser. Claude Code Cursor GitHub Copilot 892installs