Skills and MCP tagged “anndata”

scvi-tools official anthropics skill A skill providing deep learning workflows for single-cell genomics with scvi-tools. It guides model selection, batch correction, and AnnData processing pipelines. Claude Code CX Codex Cursor +1 2,400installs single-cell-rna-qc official anthropics skill Runs QC for single-cell RNA-seq data, filters cells with MAD-based rules, and creates plots. Use it for initial checks of .h5ad or .h5 files. Claude Code CX Codex Cursor +1 2,400installs scvelo K-Dense-AI skill Runs RNA velocity analysis from spliced and unspliced count matrices using scVelo. Useful for directional trajectory hypotheses alongside Scanpy workflows. Claude Code CX Codex Cursor +1 1,900installs scvi-tools K-Dense-AI skill Guides probabilistic modelling for single-cell omics data. Use it for batch integration, cell annotation, multimodal data, and model-based uncertainty. Claude Code CX Codex Cursor +1 1,900installs cellxgene-census K-Dense-AI skill A skill for programmatic access to CZ CELLxGENE Census, a vast catalog of standardized single-cell transcriptomics data. Query metadata, gene expression, and embeddings without downloading entire datasets. Claude Code CX Codex Cursor +1 1,900installs scanpy K-Dense-AI skill A skill with ready-made CLI scripts for the full single-cell RNA-seq workflow: QC, normalization, clustering, marker genes, visualization. Use it when you want Scanpy results without writing the pipeline by hand. Claude Code CX Codex Cursor +1 1,900installs