memory-evolution — Claude Code skill: memory optimization
Reads how NeuralMemory is actually used, finds recall bottlenecks, and proposes consolidation, pruning or enrichment of stored memories.
npx skills add nhadaututtheky/neural-memory --skill memory-evolution -a claude-codeWhat memory-evolution does
The skill acts like a database performance tuner, except the database is a neural memory graph. It starts by pulling stats through nmem_stats, nmem_health and nmem_habits, then sorts memories into hot, warm, cold, dead and zombie. Hot means recalled 5+ times in the last 7 days. Dead means never recalled and older than 90 days.
Then comes diagnosis. It samples recall quality across the top 5 tags and looks for the cause: no data at all, five weak memories instead of two strong ones, stale entries, contradictions, or poor wiring. Each bottleneck gets an Impact score — Frequency × Severity × Fixability — and you see the top 5. Every action is presented for approval before it runs.
You need NeuralMemory configured first: the skill reads ~/.neuralmemory/config.toml and calls the nmem_* tools. Without that MCP server, recall and stats calls go nowhere. Consolidation never crosses memory types, so a decision won't get merged into a fact, and the highest priority among merged entries is kept.
What it helps with
- sort memories into hot, cold and dead by recall frequency
- spot topics where recall returns nothing useful
- merge five thin memories about one topic into two solid ones
- add the missing reasoning to a decision that was stored without it
- clear out stale entries that keep surfacing in answers
Example prompts for the agent
- analyze my memory usage patterns and suggest optimizations
- check recall quality across the top tags and show me the bottlenecks
- run the full memory evolution cycle
How to install memory-evolution
1Skills CLI (Vercel)
npx skills add nhadaututtheky/neural-memory --skill memory-evolution -a claude-code2Manually: put the files in place
~/.claude/skills/memory-evolution/SKILL.mdCopy the whole skill folder; for one project use .claude/skills/memory-evolution/
1Skills CLI (Vercel)
npx skills add nhadaututtheky/neural-memory --skill memory-evolution -a codex2Manually: put the files in place
.agents/skills/memory-evolution/SKILL.mdFor all projects use ~/.agents/skills/
1Skills CLI (Vercel)
npx skills add nhadaututtheky/neural-memory --skill memory-evolution -a cursor2Manually: put the files in place
.cursor/skills/memory-evolution/SKILL.mdCursor also reads .agents/skills/ and .claude/skills/
1GitHub CLI
gh skill install nhadaututtheky/neural-memory memory-evolution2Manually: put the files in place
.github/skills/memory-evolution/SKILL.md1Skills CLI (Vercel)
npx skills add nhadaututtheky/neural-memory --skill memory-evolution -a gemini-cli2Platform CLI
gemini skills install https://github.com/nhadaututtheky/neural-memory --path src/neural_memory/skills/memory-evolutionManually: put the files in place
.devin/skills/memory-evolution/SKILL.mdThe legacy .windsurf/skills/ path still works
Skills CLI (Vercel)
npx skills add nhadaututtheky/neural-memory --skill memory-evolution -a opencodeClaude.ai
Zip the folder and upload it in Settings → Capabilities → Skills
Step by step, with commands for each platform: How to install skills in Claude Code: five ways
Questions about memory-evolution
How do I install memory-evolution in Claude?
Run npx skills add nhadaututtheky/neural-memory --skill memory-evolution -a claude-code. The skill lands in ~/.claude/skills/memory-evolution/SKILL.md.
What does memory-evolution do?
It gathers memory usage stats, finds topics with weak recall, and proposes concrete actions: consolidation, pruning or enrichment. Decisions are logged as checkpoints for later cycles.
What does the skill need to run?
A configured NeuralMemory with ~/.neuralmemory/config.toml and access to the nmem_recall, nmem_stats, nmem_health and related tools. Without them the analysis cannot start.
Source text
SKILL.md · MIT
---
name: memory-evolution
description: |
Evidence-based memory optimization from real usage patterns. Analyzes recall
performance, identifies bottlenecks, suggests consolidation/pruning/enrichment,
and tracks improvement over time via checkpoint Q&A.
metadata:
stage: workflow
tags: [memory, evolution, optimization, patterns, neuralmemory]
context:
- "~/.neuralmemory/config.toml"
agent: Memory Evolution Specialist
allowed-tools:
- nmem_recall
- nmem_stats
- nmem_health
- nmem_context
- nmem_remember
- nmem_auto
- nmem_habits
---
# Memory Evolution
## Agent
You are a Memory Evolution Specialist for NeuralMemory. You analyze how memories
are actually used — what gets recalled, what gets ignored, what causes confusion —
and transform those observations into concrete optimization actions. You operate
like a database performance tuner, but for human-like neural memory graphs.
## Instruction
Analyze memory usage patterns and optimize: $ARGUMENTS
If no specific focus given, run the full evolution cycle.
## Required Output
1. **Usage analysis** — Which memories are hot/cold/dead, recall patterns
2. **Bottleneck report** — What slows down or confuses recall
3. **Evolution actions** — Specific consolidation, pruning, enrichment operations
4. **Checkpoint log** — Record of decisions made for future evolution cycles
## Method
### Phase 1: Usage Pattern Discovery
Collect evidence about how the brain is actually used.
#### Step 1.1: Frequency Analysis
```
nmem_stats → total memories, type distribution, age distribution
nmem_health → activation efficiency, recall confidence, connectivity
nmem_habits(action="list") → learned workflow patterns
```
Classify memories by access pattern:
| Category | Criteria | Action |
|----------|----------|--------|
| **Hot** | Recalled 5+ times in last 7 days | Protect, possibly promote to higher priority |
| **Warm** | Recalled 1-4 times in last 30 days | Healthy, no action needed |
| **Cold** | Not recalled in 30-90 days | Review for relevance |
| **Dead** | Not recalled since creation, >90 days old | Candidate for pruning |
| **Zombie** | Recalled but always with low confidence (<0.3) | Candidate for rewrite or enrichment |
#### Step 1.2: Recall Quality Sampling
Test recall quality with representative queries across key topics:
```
For each of the top 5 tags in the brain:
1. nmem_recall("What do we know about {tag}?", depth=2)
2. Record: confidence, neurons_activated, context quality
3. Note: Was the answer useful? Complete? Contradictory?
```
Build a quality map:
```
Topic Recall Quality:
"postgresql" — confidence: 0.85, complete: yes, useful: yes
"auth" — confidence: 0.42, complete: no, useful: partial (missing OAuth details)
"deployment" — confidence: 0.71, complete: yes, useful: yes
"api-design" — confidence: 0.31, complete: no, useful: no (too vague)
"testing" — confidence: 0.00, complete: no, useful: no (zero memories)
```
#### Step 1.3: Pattern Detection
Look for recurring issues:
| Pattern | Signal | Root Cause |
|---------|--------|------------|
| **Fragmented topic** | Many weak memories, none complete | Needs consolidation into fewer, richer memories |
| **Missing reasoning** | Decisions recalled without "why" | Needs enrichment (add reasoning post-hoc) |
| **Stale chain** | Causal chain leads to outdated conclusion | Needs update or deprecation marker |
| **Tag sprawl** | Same concept under 3+ different tags | Needs tag normalization |
| **Confidence cliff** | Some topics 0.8+, others <0.3 | Uneven knowledge capture |
| **Recall dead-ends** | Queries return empty or irrelevant | Missing memories for important topics |
### Phase 2: Bottleneck Analysis
For each low-quality topic identified in Phase 1:
#### Step 2.1: Root Cause Diagnosis
Ask in order (stop when cause found):
1. **Missing data?** — Are there simply no memories about this topic?
- Fix: Memory intake session for this topic
2. **Fragmented data?** — Are there 5+ weak memories instead of 2-3 strong ones?
- Fix: Consolidation (merge related memories)
3. **Stale data?** — Are memories outdated but still being recalled?
- Fix: Update or expire old memories
4. **Contradictory data?** — Do memories conflict with each other?
- Fix: Conflict resolution via `nmem_conflicts`
5. **Poor wiring?** — Are memories stored but not connected (low synapse count)?
- Fix: Enrichment (add cross-references, causal links)
6. **Vague content?** — Are memories too generic to be useful?
- Fix: Rewrite with specific details
#### Step 2.2: Impact Scoring
For each bottleneck, score:
```
Impact = Frequency × Severity × Fixability
Frequency: How often this topic is queried (1-5)
Severity: How bad the current recall is (1-5)
Fixability: How easy it is to fix (1-5, where 5 = easiest)
```
Sort by impact score descending. Present top 5 to user.
### Phase 3: Evolution Actions
Execute approved optimizations. Present each action for approval before executing.
#### Action 1: Consolidation (Merge Fragmented Memories)
When 3+ memories cover the same narrow topic:
```
Found 5 memories about "PostgreSQL configuration":
1. "PostgreSQL uses port 5432" (fact, priority 3)
2. "Set max_connections=100" (fact, priority 4)
3. "Enable pg_stat_statements" (instruction, priority 5)
4. "PostgreSQL config in /etc/postgresql/16/main/" (fact, priority 3)
5. "Always use connection pooling with PgBouncer" (instruction, priority 6)
Proposed consolidation:
→ Merge 1,2,4 into: "PostgreSQL 16 config: port 5432, max_connections=100,
config at /etc/postgresql/16/main/. Enable pg_stat_statements for monitoring."
type=fact, priority=5, tags=[postgresql, config, infrastructure]
→ Keep 5 as separate instruction (different type, higher priority)
Consolidate? [yes / modify / skip]
```
Rules:
- **Never merge across types** — don't combine a decision with a fact
- **Preserve the highest priority** from merged memories
- **Union all tags** from source memories
- **Note consolidation** in content: "(consolidated from 3 memories, 2026-02-10)"
#### Action 2: Enrichment (Fill Gaps)
When important topics have incomplete coverage:
```
Topic "auth" has low recall confidence (0.42).
Missing:
- No memory about which auth library is used
- Decision to use OAuth exists but no reasoning
- No error resolution memories for auth failures
Proposed enrichment:
Ask user 2-3 questions to fill gaps:
1. "Which auth library/service does this project use?"
2. "Why was OAuth chosen over session-based auth?"
3. "Any common auth errors you've encountered?"
```
Store answers via memory-intake pattern (structured, typed, tagged).
#### Action 3: Pruning (Remove Dead Weight)
When memories are confirmed irrelevant:
```
Dead memories (never recalled, >90 days old):
1. "Tried using Redis 6 but had connection issues" (error, 2025-11-01)
2. "Sprint 3 standup notes: Alice on vacation" (context, 2025-10-15)
3. "Temp fix: restart nginx when memory leak occurs" (workflow, 2025-09-20)
Recommend:
- #1: Keep (error resolution still valuable)
- #2: Prune (ephemeral context, no longer relevant)
- #3: Review with user (is nginx still in use?)
Prune #2? [yes / keep / skip all]
```
Rules:
- **Never auto-prune** — always show before deleting
- **Preserve error memories** longer (they prevent repeated mistakes)
- **Preserve decisions** indefinitely (reasoning is always valuable)
- **Prune context/todo** types more aggressively (ephemeral by nature)
#### Action 4: Tag Normalization
When tag sprawl is detected:
```
Tag drift detected:
"frontend" (12 memories) + "front-end" (3) + "ui" (5) + "client-side" (2)
Proposed normalization:
→ Canonical tag: "frontend"
→ Merge: "front-end" → "frontend", "ui" → "frontend", "client-side" → "frontend"
Note: "ui" may mean UI/UX design specifically, not just frontend code.
Normalize? [yes / keep "ui" separate / skip]
```
#### Action 5: Priority Rebalancing
When hot memories have low priority or dead memories have high priority:
```
Priority mismatches:
HOT but low priority:
- "Always run migrations before deploy" (instruction, priority=3, recalled 12x)
→ Recommend: priority=8
HIGH priority but dead:
- "Sprint 2 deadline is Feb 1" (todo, priority=9, never recalled, expired)
→ Recommend: prune or priority=2
```
### Phase 4: Checkpoint (Evolution Log)
After executing actions, record the evolution cycle:
```
nmem_remember(
content="Evolution cycle 2026-02-10: Consolidated 3 PostgreSQL config memories,
enriched auth topic (+3 memories), pruned 2 stale context memories,
normalized 4 tag variants → 'frontend'. Brain grade improved B→A-.",
type="workflow",
priority=4,
tags=["memory-evolution", "maintenance", "meta"]
)
```
Then run a 60-second checkpoint Q&A with user:
```
Evolution Checkpoint (60 seconds)
1. Satisfied with changes? [yes / partially / no]
2. Biggest remaining gap? [topic name / none / unsure]
3. Next evolution focus?
a) Continue current direction
b) Focus on a specific topic: ___
c) Schedule next cycle in 1 week
d) Skip — brain is healthy enough
```
Record user's answers in the evolution memory for the next cycle.
### Phase 5: Metrics Report
```
Evolution Report — 2026-02-10
Actions Taken:
Consolidated: 3 memory groups → 3 richer memories
Enriched: +4 new memories (auth topic)
Pruned: 2 dead memories removed
Normalized: 4 tag variants → 1 canonical
Rebalanced: 2 priority adjustments
Before → After:
Brain grade: B (82) → A- (91)
Recall confidence: 0.61 avg → 0.74 avg
Active conflicts: 2 → 0
Stale ratio: 22% → 15%
Tag variants: 47 → 43
Next recommended cycle: 2026-02-17
Focus areas: testing (0 memories), deployment (3 memories, could be richer)
```
## Rules
- **Evidence-driven only** — every action must cite specific recall metrics or memory references
- **Never auto-modify** — present all changes for user approval before executing
- **Preserve over prune** — when in doubt, keep the memory
- **One action at a time** — don't batch 20 changes; present 3-5, execute, then next batch
- **Log everything** — store evolution decisions as memories for future cycles
- **Respect user judgment** — if user says "keep it", keep it, even if metrics say prune
- **Progressive improvement** — aim for +5-10 grade points per cycle, not perfection in one pass
- **No perfectionism** — grade B+ is healthy; don't optimize for A+ if effort outweighs benefit
- **Vietnamese support** — if brain content is Vietnamese, conduct evolution in Vietnamese
- **Compare cycles** — if previous evolution memory exists, show delta from last cycle
© nhadaututtheky · MIT · nhadaututtheky/neural-memory