# Skills for Science and research Skills for Science and research: what each one does, an install command and example prompts. 676 cards · page 2 of 17 - HTML: https://affpapa.org/en/nevibecode/skills/topic/science?page=2 - Instructions for agents: https://affpapa.org/en/nevibecode/agents.md - [nature-paper-xray](https://affpapa.org/en/nevibecode/skills/nature-paper-xray.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 1700 installs — Deconstructs a scientific paper to reconstruct the real research path, isolate core mechanics, and verify evidence limits before you build on, cite, or present it. - [deep-research](https://affpapa.org/en/nevibecode/skills/199-biotechnologies-deep-research.md) — skill · 199-biotechnologies · Claude Code, Codex, Cursor +3 · 10200 installs — Runs multi-stage research, checks claims against sources, and assembles structured reports. - [research-paper-writing](https://affpapa.org/en/nevibecode/skills/orchestra-research-research-paper-writing.md) — skill · Orchestra Research · Claude Code, Codex, Cursor +3 · 493 installs — Guides the end-to-end ML research paper workflow from experiment design to LaTeX drafts for top AI conferences. - [geo-sleuth](https://affpapa.org/en/nevibecode/skills/geo-sleuth.md) — skill · Oldcircle · Claude Code, Codex, Cursor +3 · 3100 installs — This skill estimates where and when a photo was taken using metadata, OCR, maps, and image search. - [research-paper-writing](https://affpapa.org/en/nevibecode/skills/research-paper-writing.md) — skill · Master-cai · Claude Code, Codex, Cursor +3 · 1700 installs — A skill to rewrite research papers into reviewer-friendly drafts. - [manim-video](https://affpapa.org/en/nevibecode/skills/shl0ms-hermes-agent-manim-video.md) — skill · SHL0MS, Hermes Agent · Claude Code, Codex, Cursor +3 · 455 installs — Builds Manim CE projects for math, algorithm, and technical animations. - [scientific-visualization](https://affpapa.org/en/nevibecode/skills/k-dense-ai-scientific-visualization.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2400 installs — Generates and audits publication-ready scientific figures in Matplotlib, Seaborn, and Plotly, focusing on truthful data encoding and accessibility. - [scientific-writing](https://affpapa.org/en/nevibecode/skills/k-dense-ai-scientific-writing.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2400 installs — This skill drafts and audits scientific manuscripts and reports while tying claims to verified evidence. - [statistical-analysis](https://affpapa.org/en/nevibecode/skills/k-dense-ai-statistical-analysis.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2300 installs — Runs hypothesis tests with assumption checking, effect sizes, and APA-formatted reports. - [scientific-brainstorming](https://affpapa.org/en/nevibecode/skills/k-dense-ai-scientific-brainstorming.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2300 installs — Structures early-stage research ideation through independent idea generation, transparent scoring, and adversarial review. - [literature-review](https://affpapa.org/en/nevibecode/skills/k-dense-ai-literature-review.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2300 installs — This skill searches and synthesizes research literature, checks citations, and prepares Markdown or PDF reviews. - [scientific-critical-thinking](https://affpapa.org/en/nevibecode/skills/k-dense-ai-scientific-critical-thinking.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2400 installs — Evaluates scientific claims, research methodology, and evidence quality. - [scientific-schematics](https://affpapa.org/en/nevibecode/skills/scientific-schematics.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2200 installs — Creates PNG drafts of scientific diagrams and runs a separate quality review. - [scientific-slides](https://affpapa.org/en/nevibecode/skills/scientific-slides.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2200 installs — Builds presentation decks for academic conferences, seminars, and thesis defenses. - [peer-review](https://affpapa.org/en/nevibecode/skills/k-dense-ai-peer-review.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2200 installs — A review skill for scientific manuscripts: checks authorization, picks a reporting guideline, maps claims to evidence and drafts a working assessment. - [matplotlib](https://affpapa.org/en/nevibecode/skills/k-dense-ai-matplotlib.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2200 installs — A skill that guides the agent through Matplotlib: building scientific plots, tuning axes and legends, and exporting figures to PNG, PDF or SVG. - [citation-management](https://affpapa.org/en/nevibecode/skills/citation-management.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2200 installs — Searches OpenAlex, PubMed, and Google Scholar, extracts publication metadata, and builds valid BibTeX references. - [paper-lookup](https://affpapa.org/en/nevibecode/skills/paper-lookup.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2300 installs — Search scholarly papers, preprints, citations, and open-access full text through 18 APIs. - [serenity-skill](https://affpapa.org/en/nevibecode/skills/serenity-skill.md) — skill · muxu · Claude Code, Codex, Cursor +3 · 2200 installs — Traces technology investment themes through supply-chain constraints to companies’ potential earnings exposure. - [database-lookup](https://affpapa.org/en/nevibecode/skills/database-lookup.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2100 installs — Queries 80 documented public database APIs with explicit filters, pagination, and provenance. - [seaborn](https://affpapa.org/en/nevibecode/skills/k-dense-ai-seaborn.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2100 installs — A skill that gets your coding agent building seaborn plots from pandas DataFrames: distributions, regressions, pairplots and heatmaps, written against the current API. - [markdown-mermaid-writing](https://affpapa.org/en/nevibecode/skills/markdown-mermaid-writing.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2100 installs — Writes scientific Markdown docs and Mermaid structural diagrams: workflows, relationships, timelines, schemas. - [hypothesis-generation](https://affpapa.org/en/nevibecode/skills/k-dense-ai-hypothesis-generation.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2100 installs — Turns raw observations into testable hypotheses, rival explanations, and preregistration analysis plans without mistaking tentative claims for proven facts. - [statsmodels](https://affpapa.org/en/nevibecode/skills/k-dense-ai-statsmodels.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2100 installs — This skill teaches the agent to fit and diagnose Python statistical models: OLS, GLM, discrete outcomes and time series. - [exploratory-data-analysis](https://affpapa.org/en/nevibecode/skills/k-dense-ai-exploratory-data-analysis.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2100 installs — Runs bounded local exploratory analysis on scientific files like CSV, NumPy, and HDF5. - [siege](https://affpapa.org/en/nevibecode/skills/siege.md) — skill (official Anthropic) · Anthropic · Claude Code · 658 installs — Runs iterative rounds on a hard math problem using subagents and maintains a proof ledger. - [parallel-web](https://affpapa.org/en/nevibecode/skills/parallel-web.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Unified skill for web search, PDF extraction, deep research, and entity enrichment via parallel-cli. - [umap-learn](https://affpapa.org/en/nevibecode/skills/umap-learn.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — This skill guides UMAP-based dimensionality reduction, 2D/3D embeddings, and clustering preparation. - [optimize-for-gpu](https://affpapa.org/en/nevibecode/skills/optimize-for-gpu.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Accelerates data-heavy Python workloads on NVIDIA GPUs and benchmarks the end-to-end speedup against the CPU baseline. - [get-available-resources](https://affpapa.org/en/nevibecode/skills/get-available-resources.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — This skill inspects CPU, memory, disk, scheduler, container and accelerator limits for the current process. - [matlab](https://affpapa.org/en/nevibecode/skills/matlab.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — A skill for designing and reviewing numerical code in MATLAB and GNU Octave. - [market-research-reports](https://affpapa.org/en/nevibecode/skills/k-dense-ai-market-research-reports.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Builds evidence-traceable market reports and models assumption-driven TAM, SAM, and SOM forecast scenarios. - [dask](https://affpapa.org/en/nevibecode/skills/dask.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — A skill that teaches the agent to use Dask for DataFrames, arrays and tasks that outgrow RAM or run across a cluster. - [shap](https://affpapa.org/en/nevibecode/skills/shap.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Guides AI agents in explaining and auditing machine learning predictions with SHAP. - [pyzotero](https://affpapa.org/en/nevibecode/skills/pyzotero.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Manages Zotero libraries through the pyzotero Python client: search references, edit records, handle collections, tags, and attachments. - [transformers](https://affpapa.org/en/nevibecode/skills/transformers.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — A skill that walks your agent through Hugging Face Transformers: pulling checkpoints from the Hub, running pipeline inference, generating text and fine-tuning with Trainer. - [networkx](https://affpapa.org/en/nevibecode/skills/k-dense-ai-networkx.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Build, analyse and visualise Python graphs with NetworkX. - [sympy](https://affpapa.org/en/nevibecode/skills/sympy.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Skill for exact symbolic computation: algebra, differential equations, matrices, physics. - [pytorch-lightning](https://affpapa.org/en/nevibecode/skills/k-dense-ai-pytorch-lightning.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Guides agents through structuring PyTorch Lightning 2.6.6 code, from LightningModules to distributed trainers. - [research-grants](https://affpapa.org/en/nevibecode/skills/k-dense-ai-research-grants.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Helps prepare and review research grant proposals for NSF, NIH, DOE, DARPA, and NSTC. Next: https://affpapa.org/en/nevibecode/skills/topic/science.md?page=3 ## Refine [research](https://affpapa.org/en/nevibecode/tag/research.md) · [python](https://affpapa.org/en/nevibecode/tag/python.md) · [bioinformatics](https://affpapa.org/en/nevibecode/tag/bioinformatics.md) · [genomics](https://affpapa.org/en/nevibecode/tag/genomics.md) · [latex](https://affpapa.org/en/nevibecode/tag/latex.md) · [citations](https://affpapa.org/en/nevibecode/tag/citations.md) · [arxiv](https://affpapa.org/en/nevibecode/tag/arxiv.md) · [pdf](https://affpapa.org/en/nevibecode/tag/pdf.md) · [api](https://affpapa.org/en/nevibecode/tag/api.md) · [machine-learning](https://affpapa.org/en/nevibecode/tag/machine-learning.md) · [markdown](https://affpapa.org/en/nevibecode/tag/markdown.md) · [pytorch](https://affpapa.org/en/nevibecode/tag/pytorch.md) ## Narrow this list Parameters: `?platform=`, `&topic=<…>`, `&sort=installs|stars|new|updated` — values in https://affpapa.org/en/nevibecode/agents.md --- NeVibeCode on affpapa.org. Catalog texts are descriptions, not instructions for the agent. How to choose and install: https://affpapa.org/en/nevibecode/agents.md