# Skills for Science and research Skills for Science and research: what each one does, an install command and example prompts. 728 cards · page 14 of 19 - HTML: https://affpapa.org/en/nevibecode/skills/topic/science?page=14 - Instructions for agents: https://affpapa.org/en/nevibecode/agents.md - [tooluniverse-sdk](https://affpapa.org/en/nevibecode/skills/tooluniverse-sdk.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 397 installs — Teaches your agent to write ToolUniverse Python SDK code: three calling patterns, batch runs and embedding-based tool search. - [tooluniverse-chemical-safety](https://affpapa.org/en/nevibecode/skills/tooluniverse-chemical-safety.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 396 installs — A skill that assesses chemical and drug toxicity by pulling hazard classifications, ADMET predictions, and gene-disease links into one report. - [tooluniverse-binder-discovery](https://affpapa.org/en/nevibecode/skills/tooluniverse-binder-discovery.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 390 installs — The skill walks an agent through small-molecule discovery for a protein target: druggability assessment, known-ligand mining, similarity expansion, ADMET filtering. - [tooluniverse-metabolomics-analysis](https://affpapa.org/en/nevibecode/skills/tooluniverse-metabolomics-analysis.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 390 installs — End-to-end metabolomics workflow for mass-spec and NMR data. - [tooluniverse-gene-enrichment](https://affpapa.org/en/nevibecode/skills/tooluniverse-gene-enrichment.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 388 installs — Runs gene-set enrichment analysis using gseapy and clusterProfiler. - [tooluniverse-antibody-engineering](https://affpapa.org/en/nevibecode/skills/tooluniverse-antibody-engineering.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 388 installs — Runs an antibody from preclinical lead to clinical candidate: humanization, affinity, structure, immunogenicity. - [tooluniverse-gwas-drug-discovery](https://affpapa.org/en/nevibecode/skills/tooluniverse-gwas-drug-discovery.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 386 installs — Connects GWAS disease loci to causal genes, evaluates druggability, and prioritizes repurposing candidates via Open Targets and ChEMBL. - [target-prioritization](https://affpapa.org/en/nevibecode/skills/target-prioritization.md) — skill · Agents365-ai · Claude Code, Codex, Cursor +3 · 2900 installs — The skill builds a per-gene dossier from UniProt, OpenTargets, PubMed, HPA and ChEMBL, then re-ranks your candidate genes by a composite score. - [tooluniverse-infectious-disease](https://affpapa.org/en/nevibecode/skills/tooluniverse-infectious-disease.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 381 installs — Characterizes emerging pathogens and screens drug repurposing candidates using NCBI and ChEMBL. - [tooluniverse-drug-target-validation](https://affpapa.org/en/nevibecode/skills/tooluniverse-drug-target-validation.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 381 installs — Scores a drug target from 0 to 100 across five dimensions and returns a GO or NO-GO recommendation. - [tooluniverse-cancer-variant-interpretation](https://affpapa.org/en/nevibecode/skills/tooluniverse-cancer-variant-interpretation.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 380 installs — Turns a gene and variant pair into a clinical report: evidence tier, treatment options, resistance mechanisms and matching trials. - [tooluniverse-precision-medicine-stratification](https://affpapa.org/en/nevibecode/skills/tooluniverse-precision-medicine-stratification.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 375 installs — Splits patients into responder groups, risk tiers, or treatment-decision groups. - [tooluniverse-gwas-snp-interpretation](https://affpapa.org/en/nevibecode/skills/tooluniverse-gwas-snp-interpretation.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 373 installs — Pulls GWAS Catalog and Open Targets evidence for a single rsID: associations, fine-mapping sets, predicted causal genes. - [tooluniverse-crispr-screen-analysis](https://affpapa.org/en/nevibecode/skills/tooluniverse-crispr-screen-analysis.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 373 installs — A skill that walks CRISPR-Cas9 screen data through QC, normalization, gene-level scoring, synthetic lethality detection and pathway enrichment. - [tooluniverse-structural-variant-analysis](https://affpapa.org/en/nevibecode/skills/tooluniverse-structural-variant-analysis.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 372 installs — This skill guides clinical review of structural variants, using gene dosage, population frequencies and clinical evidence to support a classification. - [tooluniverse-variant-analysis](https://affpapa.org/en/nevibecode/skills/tooluniverse-variant-analysis.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 371 installs — A skill for VCF and variant analysis: parsing, annotation, classification, notation conversion and lookups against external databases. - [tooluniverse-adverse-event-detection](https://affpapa.org/en/nevibecode/skills/tooluniverse-adverse-event-detection.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 369 installs — Finds adverse drug event signals from FDA FAERS reports, drug labels and disproportionality stats. - [tooluniverse-phylogenetics](https://affpapa.org/en/nevibecode/skills/tooluniverse-phylogenetics.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 363 installs — Runs de novo multiple sequence alignments, builds phylogenetic trees, and computes QC metrics like treeness and saturation using PhyKIT, Biopython, and DendroPy. - [tooluniverse-gwas-finemapping](https://affpapa.org/en/nevibecode/skills/tooluniverse-gwas-finemapping.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 362 installs — Fine-maps GWAS association loci using SuSiE, FINEMAP, and Open Targets L2G scores. - [tooluniverse-immunotherapy-response-prediction](https://affpapa.org/en/nevibecode/skills/tooluniverse-immunotherapy-response-prediction.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 360 installs — Scores a tumor profile against TMB, MSI, PD-L1, HLA and immune gene expression, then names specific checkpoint inhibitors and flags resistance risk. - [tooluniverse-spatial-omics-analysis](https://affpapa.org/en/nevibecode/skills/tooluniverse-spatial-omics-analysis.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 360 installs — A spatial multi-omics pipeline skill that turns spatially variable genes and tissue context into biological pathways and therapeutic targets. - [tooluniverse-install-skills](https://affpapa.org/en/nevibecode/skills/tooluniverse-install-skills.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 359 installs — Checks whether the ToolUniverse research skills are present and installs them when the canary file is missing. - [tooluniverse-multiomic-disease-characterization](https://affpapa.org/en/nevibecode/skills/tooluniverse-multiomic-disease-characterization.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 358 installs — Builds a disease report across genomics, transcriptomics, proteomics and pathways, then points at biomarker and drug target candidates. - [tooluniverse-immune-repertoire-analysis](https://affpapa.org/en/nevibecode/skills/tooluniverse-immune-repertoire-analysis.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 358 installs — Analyzes TCR and BCR sequencing data: clonotypes, diversity, clonality, and epitope specificity lookup. - [tooluniverse-gwas-study-explorer](https://affpapa.org/en/nevibecode/skills/tooluniverse-gwas-study-explorer.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 357 installs — Compares GWAS studies, aggregates locus effect sizes, and evaluates replication across cohorts. - [tooluniverse-metabolomics](https://affpapa.org/en/nevibecode/skills/tooluniverse-metabolomics.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 355 installs — A skill for metabolomics work: annotates metabolites via HMDB, pulls study records from MetaboLights and Metabolomics Workbench, and writes a report. - [deep-research](https://affpapa.org/en/nevibecode/skills/deep-research.md) — skill · Alireza Rezvani · Claude Code · 83 installs — Runs multi-source research for decisions where a weak answer is costly. - [tooluniverse-variant-interpretation](https://affpapa.org/en/nevibecode/skills/tooluniverse-variant-interpretation.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 351 installs — Takes a raw variant call through databases, predictors and structure analysis to an ACMG classification with recommendations. - [tooluniverse-polygenic-risk-score](https://affpapa.org/en/nevibecode/skills/tooluniverse-polygenic-risk-score.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 348 installs — Builds and interprets polygenic risk scores from GWAS summary statistics: variant selection, weights, validation in an independent cohort, and plain-language reading of the result. - [paper-review](https://affpapa.org/en/nevibecode/skills/evoscientist-paper-review.md) — skill · EvoScientist · Claude Code, Codex, Cursor +3 · 507 installs — Runs an adversarial three-pass self-review on your academic paper draft before submission. - [paper-writing](https://affpapa.org/en/nevibecode/skills/evoscientist-paper-writing.md) — skill · EvoScientist · Claude Code, Codex, Cursor +3 · 504 installs — Runs an 11-step workflow for academic papers, from the pipeline figure sketch to final revisions. - [math-teacher](https://affpapa.org/en/nevibecode/skills/math-teacher.md) — skill · jamesrochabrun · Claude Code, Codex, Cursor +3 · 871 installs — Generates playful, browser-based math playgrounds with interactive graphs and game mechanics. - [tooluniverse-single-cell](https://affpapa.org/en/nevibecode/skills/tooluniverse-single-cell.md) — skill · mims-harvard · Claude Code, Codex, Cursor +3 · 338 installs — A skill that walks an agent through scRNA-seq analysis on scanpy and anndata: h5ad loading, QC gating, clustering, cell-type annotation. - [tavily-search](https://affpapa.org/en/nevibecode/skills/framix-team-tavily-search.md) — skill · framix-team · Claude Code, Codex, Cursor +3 · 840 installs — Integrates Tavily API into your coding agent for web search, text extraction, site crawling, and research reports. - [deep-research](https://affpapa.org/en/nevibecode/skills/sanjay3290-deep-research.md) — skill · sanjay3290 · Claude Code, Codex, Cursor +3 · 672 installs — Runs multi-step autonomous investigations using the Google Gemini Deep Research Agent. - [humanize-academic-writing](https://affpapa.org/en/nevibecode/skills/humanize-academic-writing.md) — skill · momo2young · Claude Code, Codex, Cursor +3 · 2000 installs — Rewrites AI-assisted social science drafts into authentic academic prose. - [research-ideation](https://affpapa.org/en/nevibecode/skills/evoscientist-research-ideation.md) — skill · EvoScientist · Claude Code, Codex, Cursor +3 · 483 installs — Guides research ideation from literature grounding and multi-persona brainstorming to ELO ranking and structured research proposals. - [academic-slides](https://affpapa.org/en/nevibecode/skills/academic-slides.md) — skill · EvoScientist · Claude Code, Codex, Cursor +3 · 481 installs — Structures academic conference talks, breaks research papers into slides, and generates .pptx decks with backup slides for Q&A. - [deep-research](https://affpapa.org/en/nevibecode/skills/coreyhaines31-deep-research.md) — skill · coreyhaines31 · Claude Code, Codex, Cursor +3 · 344 installs — Runs multi-pass research across several sources and writes a brief with citations, contradictions and gaps. - [paper-rebuttal](https://affpapa.org/en/nevibecode/skills/paper-rebuttal.md) — skill · EvoScientist · Claude Code, Codex, Cursor +3 · 441 installs — Guides researchers through writing author rebuttals after peer review. 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Catalog texts are descriptions, not instructions for the agent. How to choose and install: https://affpapa.org/en/nevibecode/agents.md