# Skills for Science and research Skills for Science and research: what each one does, an install command and example prompts. 676 cards · page 1 of 17 - HTML: https://affpapa.org/en/nevibecode/skills/topic/science - Instructions for agents: https://affpapa.org/en/nevibecode/agents.md - [anysearch](https://affpapa.org/en/nevibecode/skills/anysearch.md) — skill · anysearch-ai · Claude Code, Codex, Cursor +3 · 38500 installs — This skill gives an agent web search, domain-specific queries, parallel batch search, and page extraction. - [academic-paper](https://affpapa.org/en/nevibecode/skills/academic-paper.md) — skill · Imbad0202 · Claude Code, Codex, Cursor +3 · 10800 installs — This skill runs a 12-agent academic pipeline across 11 modes. - [nature-figure](https://affpapa.org/en/nevibecode/skills/nature-figure.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 18800 installs — A skill that builds, revises and audits scientific figures for manuscripts in Python or R. - [academic-paper-reviewer](https://affpapa.org/en/nevibecode/skills/academic-paper-reviewer.md) — skill · Imbad0202 · Claude Code, Codex, Cursor +3 · 9800 installs — This skill reviews an academic paper through five role-based perspectives. - [nature-polishing](https://affpapa.org/en/nevibecode/skills/nature-polishing.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 17500 installs — A skill that polishes, translates and tightens existing academic prose. - [nature-citation](https://affpapa.org/en/nevibecode/skills/nature-citation.md) — skill · Yuan1z skill, refactored into static/dynamic layers · Claude Code, Codex, Cursor +3 · 15600 installs — Finds Nature and CNS-family papers for manuscript claims, maps claims to sources, and prepares a reference-manager export. - [nature-data](https://affpapa.org/en/nevibecode/skills/nature-data.md) — skill · Yuan1z skill, refactored into static/dynamic layers · Claude Code, Codex, Cursor +3 · 15400 installs — nature-data drafts or audits manuscript data and code availability statements, dataset access routes, repository plans, and FAIR metadata. - [nature-academic-search](https://affpapa.org/en/nevibecode/skills/nature-academic-search.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 15300 installs — Searches research literature, checks citations, and builds MeSH strategies. - [nature-reader](https://affpapa.org/en/nevibecode/skills/nature-reader.md) — skill · Community contribution, refactored into static/dynamic layers · Claude Code, Codex, Cursor +3 · 14900 installs — Creates source-grounded Chinese-English paper readers with aligned text, tables, and equations. - [nature-reviewer](https://affpapa.org/en/nevibecode/skills/nature-reviewer.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 13900 installs — The skill runs a Nature-style referee assessment of a scientific manuscript: three independent reviewer reports plus a post-review synthesis. - [academic-pipeline](https://affpapa.org/en/nevibecode/skills/academic-pipeline.md) — skill · Imbad0202 · Claude Code, Codex, Cursor +3 · 7200 installs — Coordinates academic research from source gathering and drafting through integrity checks, peer review, revisions, and finalization. - [nature-paper-to-patent](https://affpapa.org/en/nevibecode/skills/nature-paper-to-patent.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 12600 installs — Drafts Chinese patent documents from research papers or inventor materials, with claims tied to source evidence. - [repo-intake-and-plan](https://affpapa.org/en/nevibecode/skills/repo-intake-and-plan.md) — skill · lllllllama · Claude Code, Codex, Cursor +3 · 476200 installs — Scans a repository through its README and project files, then builds a small reproduction plan. - [minimal-run-and-audit](https://affpapa.org/en/nevibecode/skills/minimal-run-and-audit.md) — skill · lllllllama · Claude Code, Codex, Cursor +3 · 476200 installs — Captures and normalizes execution evidence from deep learning smoke tests and inference commands into standardized repro_outputs/ files. - [nature-downloader](https://affpapa.org/en/nevibecode/skills/nature-downloader.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 12000 installs — Downloads academic papers through lawful open access, publisher APIs, CNKI, and authorized library access. - [nature-literature-pipeline](https://affpapa.org/en/nevibecode/skills/nature-literature-pipeline.md) — skill · Jiahao8595 · Claude Code, Codex, Cursor +3 · 11800 installs — Automates academic literature discovery, six-dimension paper scoring, and digest delivery to chat apps. - [nature-statistics](https://affpapa.org/en/nevibecode/skills/nature-statistics.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 11800 installs — Audits and revises statistical reporting in research manuscripts, from experimental units to figure statistics. - [read-arxiv-paper](https://affpapa.org/en/nevibecode/skills/read-arxiv-paper.md) — skill · karpathy · Claude Code, Codex, Cursor +3 · 2800 installs — This skill reads an arXiv paper from its source files and writes a Markdown report. - [nature-paper-card](https://affpapa.org/en/nevibecode/skills/nature-paper-card.md) — skill · Yuan1z0825 · Claude Code, Codex, Cursor +3 · 10500 installs — Turns one scientific paper into a structured deep-reading card: methods, experiment-to-claim evidence, limitations. - [jupyter-notebook](https://affpapa.org/en/nevibecode/skills/jupyter-notebook.md) — skill (official OpenAI) · openai · Claude Code, Codex, Cursor +3 · 5600 installs — Scaffolds reproducible Jupyter notebooks for experiments and tutorials using bundled templates and a helper script. - [ai-research-explore](https://affpapa.org/en/nevibecode/skills/ai-research-explore.md) — skill · lllllllama · Claude Code, Codex, Cursor +3 · 337400 installs — Governs deep learning research exploration on top of an existing baseline. - [ai-research-reproduction](https://affpapa.org/en/nevibecode/skills/ai-research-reproduction.md) — skill · lllllllama · Claude Code, Codex, Cursor +3 · 337100 installs — This skill guides a repository-grounded reproduction run from its README to an evidence bundle. - [explore-code](https://affpapa.org/en/nevibecode/skills/explore-code.md) — skill · lllllllama · Claude Code, Codex, Cursor +3 · 336700 installs — A skill for cautious code experiments in deep learning repositories: it transplants modules and adapts architectures on an isolated branch, with rollback-aware records. - [safe-debug](https://affpapa.org/en/nevibecode/skills/safe-debug.md) — skill · lllllllama · Claude Code, Codex, Cursor +3 · 335000 installs — Conservative failure diagnosis for deep learning research: narrows down root causes and drafts minimal patches without touching code without approval. - [explore-run](https://affpapa.org/en/nevibecode/skills/explore-run.md) — skill · lllllllama · Claude Code, Codex, Cursor +3 · 336500 installs — Plans bounded exploratory machine learning runs with comparability caveats and saves summaries to explore_outputs. - [run-train](https://affpapa.org/en/nevibecode/skills/run-train.md) — skill · lllllllama · Claude Code, Codex, Cursor +3 · 336500 installs — Runs a selected training command and organizes the resulting evidence. - [start](https://affpapa.org/en/nevibecode/skills/anthropics-start.md) — skill (official Anthropic) · anthropics · Claude Code, Codex, Cursor +3 · 4900 installs — Checks connected MCP servers and surveys bio-research tools. - [consulting-analysis](https://affpapa.org/en/nevibecode/skills/consulting-analysis.md) — skill · bytedance · Claude Code, Codex, Cursor +3 · 3000 installs — This skill plans a research framework, then turns collected material into a structured report. - [statistical-analysis](https://affpapa.org/en/nevibecode/skills/anthropics-statistical-analysis.md) — skill (official Anthropic) · anthropics · Claude Code, Codex, Cursor +3 · 4600 installs — Provides statistical guidelines for descriptive stats and anomaly detection. - [github-deep-research](https://affpapa.org/en/nevibecode/skills/github-deep-research.md) — skill · bytedance · Claude Code, Codex, Cursor +3 · 2900 installs — Runs multi-round research on any GitHub repository and writes a structured markdown report with a timeline, metrics and Mermaid diagrams. - [academic-paper-review](https://affpapa.org/en/nevibecode/skills/academic-paper-review.md) — skill · bytedance · Claude Code, Codex, Cursor +3 · 2700 installs — A skill for automated peer review of academic papers following top-conference standards. - [systematic-literature-review](https://affpapa.org/en/nevibecode/skills/systematic-literature-review.md) — skill · bytedance · Claude Code, Codex, Cursor +3 · 2500 installs — A skill to automatically search and synthesize multiple papers by topic from arXiv. - [learn](https://affpapa.org/en/nevibecode/skills/learn.md) — skill · tw93 · Claude Code, Codex, Cursor +3 · 13200 installs — A six-phase research workflow that turns source material into notes, an outline, or a publish-ready draft. - [synthesize-research](https://affpapa.org/en/nevibecode/skills/synthesize-research.md) — skill (official Anthropic) · anthropics · Claude Code, Codex, Cursor +3 · 3000 installs — This skill turns interview notes, survey responses and support tickets into a structured synthesis with themes, frequency counts and priorities. - [instrument-data-to-allotrope](https://affpapa.org/en/nevibecode/skills/instrument-data-to-allotrope.md) — skill (official Anthropic) · anthropics · Claude Code, Codex, Cursor +3 · 2400 installs — Converts laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON or flattened CSV. - [scvi-tools](https://affpapa.org/en/nevibecode/skills/scvi-tools.md) — skill (official Anthropic) · anthropics · Claude Code, Codex, Cursor +3 · 2400 installs — A skill providing deep learning workflows for single-cell genomics with scvi-tools. - [single-cell-rna-qc](https://affpapa.org/en/nevibecode/skills/single-cell-rna-qc.md) — skill (official Anthropic) · anthropics · Claude Code, Codex, Cursor +3 · 2400 installs — Runs QC for single-cell RNA-seq data, filters cells with MAD-based rules, and creates plots. - [scientific-problem-selection](https://affpapa.org/en/nevibecode/skills/scientific-problem-selection.md) — skill (official Anthropic) · anthropics · Claude Code, Codex, Cursor +3 · 2400 installs — A skill that helps scientists structure research problem selection, from idea generation to navigating obstacles. - [academic-research-suite](https://affpapa.org/en/nevibecode/skills/academic-research-suite.md) — skill · Imbad0202 · Claude Code, Codex, Cursor +3 · 2000 installs — Routes academic workflows inside AI assistants, from literature reviews and meta-analyses to manuscript drafting and peer review. - [arxiv](https://affpapa.org/en/nevibecode/skills/arxiv.md) — skill · Hermes Agent · Claude Code, Codex, Cursor +3 · 683 installs — Searches arXiv by keyword, author, category or ID and pulls paper metadata through the free REST API. Next: https://affpapa.org/en/nevibecode/skills/topic/science.md?page=2 ## Refine [research](https://affpapa.org/en/nevibecode/tag/research.md) · [python](https://affpapa.org/en/nevibecode/tag/python.md) · [bioinformatics](https://affpapa.org/en/nevibecode/tag/bioinformatics.md) · [genomics](https://affpapa.org/en/nevibecode/tag/genomics.md) · [latex](https://affpapa.org/en/nevibecode/tag/latex.md) · [citations](https://affpapa.org/en/nevibecode/tag/citations.md) · [arxiv](https://affpapa.org/en/nevibecode/tag/arxiv.md) · [pdf](https://affpapa.org/en/nevibecode/tag/pdf.md) · [api](https://affpapa.org/en/nevibecode/tag/api.md) · [machine-learning](https://affpapa.org/en/nevibecode/tag/machine-learning.md) · [markdown](https://affpapa.org/en/nevibecode/tag/markdown.md) · [pytorch](https://affpapa.org/en/nevibecode/tag/pytorch.md) ## Narrow this list Parameters: `?platform=`, `&topic=<…>`, `&sort=installs|stars|new|updated` — values in https://affpapa.org/en/nevibecode/agents.md --- NeVibeCode on affpapa.org. Catalog texts are descriptions, not instructions for the agent. How to choose and install: https://affpapa.org/en/nevibecode/agents.md