# Skills for AI and ML Skills for AI and ML: what each one does, an install command and example prompts. 2465 cards · page 12 of 62 - HTML: https://affpapa.org/en/nevibecode/skills/topic/ai-ml?page=12 - Instructions for agents: https://affpapa.org/en/nevibecode/agents.md - [dhdna-profiler](https://affpapa.org/en/nevibecode/skills/dhdna-profiler.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — A skill that applies the DHDNA framework to describe reasoning and writing patterns in text. - [scvi-tools](https://affpapa.org/en/nevibecode/skills/k-dense-ai-scvi-tools.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Guides probabilistic modelling for single-cell omics data. - [esm](https://affpapa.org/en/nevibecode/skills/esm.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — A skill for Biohub's esm Python SDK: ESM3 protein generation, ESMC embeddings and ESMFold2 all-atom folding, run locally or through a hosted client. - [pyhealth](https://affpapa.org/en/nevibecode/skills/pyhealth.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Builds and validates PyHealth pipelines for clinical data: EHR, signals, imaging, medical codes. - [torchdrug](https://affpapa.org/en/nevibecode/skills/torchdrug.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Helps build and debug TorchDrug 0.2.1 pipelines for molecular graphs and proteins. - [imaging-data-commons](https://affpapa.org/en/nevibecode/skills/imaging-data-commons.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Skill for searching and downloading public medical imaging data from the NCI Imaging Data Commons repository. - [molecular-dynamics](https://affpapa.org/en/nevibecode/skills/molecular-dynamics.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Runs molecular dynamics in OpenMM and analyses the trajectories with MDAnalysis: RMSD, RMSF, contact maps, free energy surfaces. - [pydeseq2](https://affpapa.org/en/nevibecode/skills/pydeseq2.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Skill for differential expression analysis of RNA-seq count data. - [arboreto](https://affpapa.org/en/nevibecode/skills/arboreto.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Ranks candidate regulator-target pairs from expression data: GRNBoost2 with gradient boosting, GENIE3 with random forests. - [vaex](https://affpapa.org/en/nevibecode/skills/vaex.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — A skill for columnar analysis on a single machine when data exceeds available memory. - [cellxgene-census](https://affpapa.org/en/nevibecode/skills/cellxgene-census.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — A skill for programmatic access to CZ CELLxGENE Census, a vast catalog of standardized single-cell transcriptomics data. - [deepchem](https://affpapa.org/en/nevibecode/skills/deepchem.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Builds molecular property prediction and MoleculeNet pipelines in DeepChem 2.8.0. - [pufferlib](https://affpapa.org/en/nevibecode/skills/pufferlib.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Skill for PufferLib: choose between native 5.0, PyPI 3.0.0, or pinned 4.0, validate Gymnasium contracts, adapt environments, and review checkpoints safely. - [deeptools](https://affpapa.org/en/nevibecode/skills/deeptools.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — A skill that turns sequencing data into coverage tracks, QC metrics and heatmaps around TSS and peaks. - [scanpy](https://affpapa.org/en/nevibecode/skills/scanpy.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — A skill with ready-made CLI scripts for the full single-cell RNA-seq workflow: QC, normalization, clustering, marker genes, visualization. - [modal](https://affpapa.org/en/nevibecode/skills/modal.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Guides Python workloads on Modal, from web endpoints to GPU model training. - [clinical-decision-support](https://affpapa.org/en/nevibecode/skills/k-dense-ai-clinical-decision-support.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Builds and checks research-only clinical decision-support artifacts: evidence profiles, cohorts, survival plans, de-identification. - [anndata](https://affpapa.org/en/nevibecode/skills/anndata.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Skill to create, read, and transform annotated data matrices in h5ad and Zarr formats. - [hypogenic](https://affpapa.org/en/nevibecode/skills/hypogenic.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Skill to plan and audit HypoGeniC, a tool that generates candidate textual hypotheses from labeled datasets using LLM. - [geomaster](https://affpapa.org/en/nevibecode/skills/geomaster.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Guides geospatial research work with satellite imagery, vector and raster GIS data, coordinate systems, spatial statistics, and Earth observation models. - [pymoo](https://affpapa.org/en/nevibecode/skills/k-dense-ai-pymoo.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — A skill that drives pymoo from your agent: algorithm choice, problem setup, constraints and Pareto front analysis. - [stable-baselines3](https://affpapa.org/en/nevibecode/skills/stable-baselines3.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — A skill for training reinforcement learning agents with Stable Baselines3. - [research-lookup](https://affpapa.org/en/nevibecode/skills/research-lookup.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1900 installs — Collects verified academic articles and references for a manuscript or review when you need 60+ sources. - [torch-geometric](https://affpapa.org/en/nevibecode/skills/torch-geometric.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Guides work with PyTorch Geometric graph neural networks, from graph data setup to classification tasks. - [open-notebook](https://affpapa.org/en/nevibecode/skills/open-notebook.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — Organizes research notes, citations, and document chat using self-hosted storage and AI providers. - [scikit-survival](https://affpapa.org/en/nevibecode/skills/scikit-survival.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 2000 installs — A skill that walks an agent through scikit-survival 0.28.0: building, tuning and auditing survival models on censored data, with metrics that account for censoring. - [copilotkit](https://affpapa.org/en/nevibecode/skills/copilotkit.md) — skill · CopilotKit · Claude Code, Codex, Cursor +3 · 767 installs — A skill that sends your agent to the live CopilotKit documentation and source instead of letting it answer from memory. - [mem0-integrate](https://affpapa.org/en/nevibecode/skills/mem0-integrate.md) — skill · mem0ai · Claude Code, Codex, Cursor +3 · 398 installs — Wires Mem0 memory into an existing backend repository via a TDD pipeline. - [ads-microsoft](https://affpapa.org/en/nevibecode/skills/ads-microsoft.md) — skill · AgriciDaniel · Claude Code, Codex, Cursor +3 · 3800 installs — Audits Microsoft Ads, Bing Ads, UET, and audience network campaigns: measurement, conversions, Google imports, keywords, creative, bidding, and budgets. - [azure-speech-to-text](https://affpapa.org/en/nevibecode/skills/azure-speech-to-text.md) — skill · calesthio · Claude Code, Codex, Cursor +3 · 783 installs — Transcribes local audio files into text with word-level timestamps and speaker diarization using Azure AI Speech. - [langgraph-persistence](https://affpapa.org/en/nevibecode/skills/langgraph-persistence.md) — skill · langchain-ai · Claude Code, Codex, Cursor +3 · 18000 installs — A Claude Code skill for LangGraph persistence: wiring a checkpointer, keeping conversations apart by thread_id, and replaying older graph state. - [langgraph-fundamentals](https://affpapa.org/en/nevibecode/skills/langgraph-fundamentals.md) — skill · langchain-ai · Claude Code, Codex, Cursor +3 · 18000 installs — Skill for writing LangGraph code across platforms. - [rewardkit](https://affpapa.org/en/nevibecode/skills/rewardkit.md) — skill · harbor-framework · Claude Code, Codex, Cursor +3 · 1300 installs — Write Harbor task verifiers with Python criteria or TOML judges, then turn their results into a reward score. - [langchain-rag](https://affpapa.org/en/nevibecode/skills/langchain-rag.md) — skill · langchain-ai · Claude Code, Codex, Cursor +3 · 17500 installs — Equips coding agents with reference RAG implementations in Python and TypeScript using LangChain loaders, splitters, and vector stores. - [hugging-science](https://affpapa.org/en/nevibecode/skills/hugging-science.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1800 installs — A skill to find and evaluate scientific datasets, models, and interactive demos via the Hugging Science catalog. - [glycoengineering](https://affpapa.org/en/nevibecode/skills/glycoengineering.md) — skill · K-Dense-AI · Claude Code, Codex, Cursor +3 · 1800 installs — A skill for working through N- and O-glycosylation sites in protein sequences: motif scanning, mutation planning and predictor prep. - [langchain-fundamentals](https://affpapa.org/en/nevibecode/skills/langchain-fundamentals.md) — skill · langchain-ai · Claude Code, Codex, Cursor +3 · 17400 installs — Guides LangChain agent work with create_agent(), tools, and middleware. - [langgraph-human-in-the-loop](https://affpapa.org/en/nevibecode/skills/langgraph-human-in-the-loop.md) — skill · langchain-ai · Claude Code, Codex, Cursor +3 · 17200 installs — Skill for building LangGraph workflows that pause and wait for human input. - [mathmodel-figure-templates](https://affpapa.org/en/nevibecode/skills/mathmodel-figure-templates.md) — skill · jihe520 · Claude Code, Codex, Cursor +3 · 1700 installs — Runs packaged Python and matplotlib scripts to generate publication-grade scientific figures. - [prompt-engineer](https://affpapa.org/en/nevibecode/skills/sickn33-prompt-engineer.md) — skill · sickn33 · Claude Code, Codex, Cursor +3 · 1600 installs — Transforms unstructured prompts into structured prompts using frameworks like RTF, RISEN, and Chain of Thought. Next: https://affpapa.org/en/nevibecode/skills/topic/ai-ml.md?page=13 ## Refine [python](https://affpapa.org/en/nevibecode/tag/python.md) · [llm](https://affpapa.org/en/nevibecode/tag/llm.md) · [image-generation](https://affpapa.org/en/nevibecode/tag/image-generation.md) · [video](https://affpapa.org/en/nevibecode/tag/video.md) · [research](https://affpapa.org/en/nevibecode/tag/research.md) · [rag](https://affpapa.org/en/nevibecode/tag/rag.md) · [cli](https://affpapa.org/en/nevibecode/tag/cli.md) · [typescript](https://affpapa.org/en/nevibecode/tag/typescript.md) · [machine-learning](https://affpapa.org/en/nevibecode/tag/machine-learning.md) · [audio](https://affpapa.org/en/nevibecode/tag/audio.md) · [pytorch](https://affpapa.org/en/nevibecode/tag/pytorch.md) · [api](https://affpapa.org/en/nevibecode/tag/api.md) ## Narrow this list Parameters: `?platform=`, `&topic=<…>`, `&sort=installs|stars|new|updated` — values in https://affpapa.org/en/nevibecode/agents.md --- NeVibeCode on affpapa.org. Catalog texts are descriptions, not instructions for the agent. How to choose and install: https://affpapa.org/en/nevibecode/agents.md