# MCP servers for Science and research MCP servers for Science and research: what each one does, an install command and example prompts. 252 cards · page 4 of 7 - HTML: https://affpapa.org/en/nevibecode/mcp/topic/science?page=4 - Instructions for agents: https://affpapa.org/en/nevibecode/agents.md - [open-meteo-mcp-server](https://affpapa.org/en/nevibecode/mcp/open-meteo-mcp-server.md) — MCP server · cyanheads · Claude Code, Codex, Cursor +5 · ★ 10 — Connects AI agents to Open-Meteo forecasts, historical climate data since 1940, and marine conditions. - [Axiomize](https://affpapa.org/en/nevibecode/mcp/axiomize.md) — MCP server · Furox-Art · Claude Code, Codex, Cursor +5 · ★ 9 — Axiomize builds versioned scientific models with units, validates them, and exports the result to SBML, CellML, or Modelica. - [jupyter-mcp-server](https://affpapa.org/en/nevibecode/mcp/jupyter-mcp-server.md) — MCP server · ChengJiale150 · Claude Code, Codex, Cursor +5 · ★ 9 — This MCP server lets an AI agent operate Jupyter notebooks, run cells, handle several notebooks, and receive text, tables, or images. - [Lex — Temporal Luxembourg and EU Law](https://affpapa.org/en/nevibecode/mcp/lex-temporal-luxembourg-and-eu-law.md) — MCP server · SFHAJJI · Claude Code, Codex, Cursor +5 · ★ 9 — An MCP server that keeps past versions of Luxembourg and EU legal texts and tells you what a provision said on a given date, with a hashed permalink. - [VirtualFlyBrain](https://affpapa.org/en/nevibecode/mcp/virtualflybrain.md) — MCP server · VirtualFlyBrain · Claude Code, Codex, Cursor +5 · ★ 9 — MCP server linking assistants to Virtual Fly Brain neuroanatomy, connectomics, and gene expression records for Drosophila melanogaster. - [zotero-mcp-local](https://affpapa.org/en/nevibecode/mcp/zotero-mcp-local.md) — MCP server · piiinpiiins · Claude Code, Codex, Cursor +5 · ★ 8 — A local MCP server that lets your coding agent search a Zotero library, read PDFs and surface related papers. - [OpenReadout](https://affpapa.org/en/nevibecode/mcp/openreadout.md) — MCP server · openreadout · Claude Code, Codex, Cursor +5 · ★ 8 — Reads raw files from microscopes, mass specs, flow cytometers, NMR and 120+ formats without vendor software. - [Plant Genomics](https://affpapa.org/en/nevibecode/mcp/plant-genomics.md) — MCP server · musharna · Claude Code, Codex, Cursor +5 · ★ 8 — This MCP server lets an agent query plant gene databases such as Ensembl Plants, UniProt, KEGG, STRING and AlphaFold, pulling together answers from several sources at once. - [Cytoscape Desktop MCP](https://affpapa.org/en/nevibecode/mcp/cytoscape-desktop-mcp.md) — MCP server · cytoscape · Claude Code, Codex, Cursor +5 · ★ 8 — Connects an AI agent to a running Cytoscape Desktop to load, arrange, and style biological networks when network work needs agent control. - [PyEuropePMC](https://affpapa.org/en/nevibecode/mcp/pyeuropepmc.md) — MCP server · JonasHeinickeBio · Claude Code, Codex, Cursor +5 · ★ 8 — Connects your coding agent to Europe PMC and related research repositories. - [Lacuna Research MCP](https://affpapa.org/en/nevibecode/mcp/lacuna-research-mcp.md) — MCP server · tiptreesystems · Claude Code, Codex, Cursor +5 · ★ 8 — Links coding agents to a machine learning knowledge graph. - [TLE Satellite Tracker](https://affpapa.org/en/nevibecode/mcp/tle-satellite-tracker.md) — MCP server · ivanstan · Claude Code, Codex, Cursor +5 · ★ 8 — Gives your agent live two-line element records: search satellites by name or pull a single record by number. - [OECD MCP Server](https://affpapa.org/en/nevibecode/mcp/oecd-mcp-server.md) — MCP server · isakskogstad · Claude Code, Codex, Cursor +5 · ★ 8 — Connects AI coding assistants to OECD statistical databases using the SDMX API. - [HadithDB](https://affpapa.org/en/nevibecode/mcp/hadithdb.md) — MCP server · iadnanmukhtar · Claude Code, Codex, Cursor +5 · ★ 8 — HadithDB lets an agent search Quran ayahs, tafsir, and hadith records, then inspect source details. - [OpenArx](https://affpapa.org/en/nevibecode/mcp/openarx.md) — MCP server · OpenArx-AI · Claude Code, Codex, Cursor +5 · ★ 8 — OpenArx gives AI agents MCP access to scientific papers, evidence checks, and a connected claim graph for research work. - [fedlex-mcp](https://affpapa.org/en/nevibecode/mcp/fedlex-mcp.md) — MCP server · malkreide · Claude Code, Codex, Cursor +5 · ★ 7 — Wires Swiss federal law, open consultations and the TERMDAT terminology base into your assistant. - [MoldSim MCP Server](https://affpapa.org/en/nevibecode/mcp/moldsim-mcp-server.md) — MCP server · moldsim · Claude Code, Codex, Cursor +5 · ★ 7 — An MCP server that hands your AI assistant injection molding knowledge: 21 material grades, process validation, DFM checklists and simulation specs. - [UNICEF Stats MCP](https://affpapa.org/en/nevibecode/mcp/unicef-stats-mcp.md) — MCP server · jpazvd · Claude Code, Codex, Cursor +5 · ★ 7 — Query UNICEF child development statistics across 200+ countries without an API key. - [rftools](https://affpapa.org/en/nevibecode/mcp/rftools.md) — MCP server · antonpogrebenko-public · Claude Code, Codex, Cursor +5 · ★ 7 — Connects 255 RF and electronics calculators plus 13 simulation workflows directly to your AI assistant. - [Statistics Canada MCP Server](https://affpapa.org/en/nevibecode/mcp/statistics-canada-mcp-server.md) — MCP server · Aryan-Jhaveri · Claude Code, Codex, Cursor +5 · ★ 7 — Gives your agent structured access to Canadian statistics through the Web Data Service and SDMX REST API. - [STRING Database MCP Server](https://affpapa.org/en/nevibecode/mcp/string-database-mcp-server.md) — MCP server · meringlab · Claude Code, Codex, Cursor +5 · ★ 7 — Lets an agent pull protein interaction networks, enrichment results, annotations and homology lookups from STRING. - [eurostat-mcp-server](https://affpapa.org/en/nevibecode/mcp/eurostat-mcp-server.md) — MCP server · cyanheads · Claude Code, Codex, Cursor +5 · ★ 7 — Connects coding agents to Eurostat indicators covering EU economics and trade. - [arxiv-mcp-server](https://affpapa.org/en/nevibecode/mcp/cyanheads-arxiv-mcp-server.md) — MCP server · cyanheads · Claude Code, Codex, Cursor +5 · ★ 7 — Searches arXiv, returns paper metadata, and reads full text. - [Disco](https://affpapa.org/en/nevibecode/mcp/disco.md) — MCP server · leap-laboratories · Claude Code, Codex, Cursor +5 · ★ 7 — Uncovers non-obvious statistical rules in tabular datasets without prior hypotheses. - [altmetric-mcp](https://affpapa.org/en/nevibecode/mcp/altmetric-mcp.md) — MCP server · altmetric · Claude Code, Codex, Cursor +5 · ★ 7 — Connects an AI agent to Altmetric APIs for tracking research attention across news, policy documents, social platforms, and other sources. - [Regulations.gov](https://affpapa.org/en/nevibecode/mcp/regulationsgov.md) — MCP server · 1102tools-dev · Claude Code, Codex, Cursor +5 · ★ 27 — This MCP server lets an agent work with Regulations.gov dockets, documents, comments, comment periods, and readiness checks. - [Federal Register](https://affpapa.org/en/nevibecode/mcp/federal-register.md) — MCP server · 1102tools-dev · Claude Code, Codex, Cursor +5 · ★ 27 — This MCP server lets an agent work with Federal Register rules, notices, executive orders, and FAR cases when regulatory documents need to be searched. - [patents-mcp](https://affpapa.org/en/nevibecode/mcp/patents-mcp.md) — MCP server · tushariitr-19 · Claude Code, Codex, Cursor +4 · ★ 6 — MCP server for querying Google Patents public records on BigQuery and exploring prior art. - [Find Research Papers](https://affpapa.org/en/nevibecode/mcp/find-research-papers.md) — MCP server · surendranb · Claude Code, Codex, Cursor +5 · ★ 6 — Connects AI assistants to arXiv, PubMed, OpenAlex, CrossRef, and Semantic Scholar. - [BAILII UK Case Law](https://affpapa.org/en/nevibecode/mcp/bailii-uk-case-law.md) — MCP server · paulieb89 · Claude Code, Codex, Cursor +5 · ★ 6 — Searches UK case law on BAILII and pulls the sections you actually need out of a judgment. - [OmniScholar](https://affpapa.org/en/nevibecode/mcp/omnischolar.md) — MCP server · luffysolution-svg · Claude Code, Codex, Cursor +5 · ★ 6 — An MCP server for literature search, Zotero reading, PDF analysis, citations, and research materials. - [Hadith Checker \[Dorar.net\]](https://affpapa.org/en/nevibecode/mcp/hadith-checker-dorarnet.md) — MCP server · ibnsaleem29 · Claude Code, Codex, Cursor +4 · ★ 6 — This MCP server searches Dorar.net for hadith, scholarly grades, narration chains, takhrij, and commentaries. - [second-brain MCP](https://affpapa.org/en/nevibecode/mcp/second-brain-mcp.md) — MCP server · ddmanyes · Claude Code, Codex, Cursor +5 · ★ 6 — A local Markdown vault that your AI agent reads, writes and tidies up on its own. - [protein-mcp-server](https://affpapa.org/en/nevibecode/mcp/protein-mcp-server.md) — MCP server · cyanheads · Claude Code, Codex, Cursor +5 · ★ 6 — Connects AI assistants to experimental and predicted protein databases like RCSB PDB, AlphaFold DB, and UniProt without requiring API tokens. - [Kshana PNT-resilience simulator](https://affpapa.org/en/nevibecode/mcp/kshana-pnt-resilience-simulator.md) — MCP server · ashfordeOU · Claude Code, Codex, Cursor +5 · ★ 6 — Wires a real simulation engine into your assistant: orbits, GNSS, INS fusion and receiver trust instead of a model guessing at the numbers. - [OpenHCS](https://affpapa.org/en/nevibecode/mcp/openhcs.md) — MCP server · OpenHCSDev · Claude Code, Codex, Cursor +5 · ★ 6 — MCP server to author, validate, and execute high-content microscopy analysis pipelines directly through AI coding agents. - [Dimensions Analytics](https://affpapa.org/en/nevibecode/mcp/dimensions-analytics.md) — MCP server · digital-science · Claude Code, Codex, Cursor +5 · ★ 6 — Connects Dimensions DSL to your coding agent for research data analysis. - [brainkb](https://affpapa.org/en/nevibecode/mcp/brainkb.md) — MCP server · sensein · Claude Code, Codex, Cursor +5 · ★ 6 — Remote MCP server for querying BrainKB neuroscience knowledge graphs. - [gdelt-mcp-server](https://affpapa.org/en/nevibecode/mcp/gdelt-mcp-server.md) — MCP server · cyanheads · Claude Code, Codex, Cursor +5 · ★ 6 — MCP server connecting agents to GDELT Project APIs for global news and US television caption analysis. - [genefoundry](https://affpapa.org/en/nevibecode/mcp/genefoundry.md) — MCP server · berntpopp · Claude Code, Codex, Cursor +5 · ★ 6 — Routes 22 biomedical MCP servers through one HTTP endpoint and lets an agent discover tools by search. Next: https://affpapa.org/en/nevibecode/mcp/topic/science.md?page=5 ## Refine [research](https://affpapa.org/en/nevibecode/tag/research.md) · [citations](https://affpapa.org/en/nevibecode/tag/citations.md) · [arxiv](https://affpapa.org/en/nevibecode/tag/arxiv.md) · [pdf](https://affpapa.org/en/nevibecode/tag/pdf.md) · [bioinformatics](https://affpapa.org/en/nevibecode/tag/bioinformatics.md) · [statistics](https://affpapa.org/en/nevibecode/tag/statistics.md) · [search](https://affpapa.org/en/nevibecode/tag/search.md) · [api](https://affpapa.org/en/nevibecode/tag/api.md) · [latex](https://affpapa.org/en/nevibecode/tag/latex.md) · [knowledge-graph](https://affpapa.org/en/nevibecode/tag/knowledge-graph.md) · [genomics](https://affpapa.org/en/nevibecode/tag/genomics.md) · [machine-learning](https://affpapa.org/en/nevibecode/tag/machine-learning.md) ## Narrow this list Parameters: `?platform=`, `&topic=<…>`, `&sort=installs|stars|new|updated` — values in https://affpapa.org/en/nevibecode/agents.md --- NeVibeCode on affpapa.org. 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